Gene detail

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Gene detail information of Glyur000003s00001142.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G73360.1	homeodomain GLABROUS 11
NR	XP_007152598.1	hypothetical protein PHAVU_004G143500g [Phaseolus vulgaris]
Swissprot	tr\|Q9FX31\|HDG11_ARATH	Homeobox-leucine zipper protein HDG11
trEMBL	tr\|V7C345\|V7C345_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW24592.1}

Sequence

Transcript Sequence

>Glyur000003s00001142.1
ATGGAGTATGGAAGTGGAGGAAGTGGGTCCCCTGGGGACCAACACCATCATCATCATCATCACCATGATGGTGGTTCTGATTCTCAGAGGAGGAAAAAGCGTTACCACCGCCACACTGCTAACCAGATTCAAAGGCTTGAAGGGATGTTCAAGGAGTGTCCACACCCAGATGAGAAGCAGAGGTTGCAGTTAAGCAGGGAGTTAGGCTTGGCTCCTAGGCAGATCAAATTTTGGTTCCAGAACAGAAGGACACAAATGAAGGCCCAGCATGAAAGAGCTGATAACTGTGCACTAAGGGCAGAGAATGACAAGATACGTTGTGAGAACATAGCCATAAGGGAAGCCCTTAAAAATGTTATCTGCCCCTCTTGTGGTGGTCCTCCAATCAATGAGGATTCTTACTTTGATGAACAAAAATTGAGATTGGAGAATGCCCAACTCAAAGAGGAGCTTGATAGAGTATCTAGTATTGCAGCTAAATACATTGGAAGACCAATCTCACAGCTTCCACCAGTTCAGCCAATTCATGTATCCTCATTGGACTTATCAATGGGAAGTTTTGGTGGTGGTGGACATCTACAAGGTTTAGGTGGTGGTGGTGGTCCTTCTCTTGATCTTGATCTTCTCCCAGGGAGTTCTTCAACCATACCACCAAATGTGCCTTACCAACCAGCTTGTCTCTCAGACATGGAGAAGTCCCTCATGTCAGACATTGCCACCAATGCCATGGAAGAATTGGTTAGGCTCTTGCAAACAAATGAGCCCTTGTGGATGAAGAACAACAACACTGATGGCAGAGATGTCCTTAACTTTGAGACCTATGAGAGAATGTTCCCTAAGAGTAACGTTAGTCACTTGAAGAACCCCAATGTTCGAATTGAGGCTTCCAGAGATTCAGGAGTTAACAAGTGGATGGAGTTATTCCCTACTATTGTCACAGTTGCAAGGACTATTGAAGTTATATCTCCTGGAATGTTGGGTGGTCATAGTGGTTCTTTGCAATTGATGTATGAAGAGATGCAAGCACTTTCTCCACTTGTTCCTACTAGAGACTTCTACTTCCTCCGTTACTGTCAGCAAATAGAACAAGGCTTGTGGGCAATAGTTACTTGGATTGAACATGTAGAGATTGAAGATAAGAGTCCAGTTCATAGGCTTTATAGAAATGTTATCTATAGTGGGGTGGCATTTGGAGCACAAAGATGGCTTACTGTTCTTCAGAGAATGTGTGAAAGGCTTGCTTGTCTAATGGTATCAGGCAATTCCACCCGTGATCTTGGAGGAGTGATTCCATCTCCTGAGGGAAAGAGGAGCATGATGAAACTTGCACAAAGGATGGTAAACAATTTCTGTGCAAGCATTAGTGCATCAGCTAGCCACAGATGGACCACACTTTCAGCACTGAATGAGATTGGAGTCAGGGTCACAGTGCGGAAGAGCACTGACCCAGGTCAACCTAATGGGGTGGTGCTAAGTGCTGCCACCACCATTTGGCTCCCCATCCCTCCTCAAACTGTCTTCAATTTCTTCAAGGATGAAAGGAAAAGACCTCAGGCATTCAACACAAGTCAGAACAACATGTTGATACTCCAAGAGAGCTGTGTGGACTCCTCTGGATCCCTTGTAGTGTATTGTCCAGTTGACCTGCCAGCTATCAACATAGCAATGAGTGGTGAAGACCCTTCCTACATCCCTTTACTCCCATCAGGCTTCACAATTTCACCTGATGGATCACAACAACAACAACAACAACATGATCCTCATGAAGATCATGGTGCATCAACCAGCACTAGCACCAACAACAACAGGTCTAATTCAGGGGGGTCCTTAATAACTGTTGCATTTCAGATCATGGTTAGTAGCTTACCATCTGCAAAACTCAACATGGAGTCTGTTGCTACTGTTAATGGCCTCATTGGTGAAACTGTCCAACACATAAAAGCTGCCTTGAATTGTCCTAGTTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00003	123845	127723	-

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function GO:0003677 DNA binding GO:0008289 lipid binding GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000003s00001142.1	PF00046.24	Homeobox	32	87	1.90E-17
Glyur000003s00001142.1	PF01852.14	START	238	369	5.90E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.040
SRR1783600	control	0.056
SRR1783602	moderate drought stress	0.019
SRR1811619	moderate drought stress	0.014

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.454
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.425

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.014
SRR2868004	Drought Stress(Tissue:root)	0.000
SRR2967015	Control (Tissue:root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.836
SRR9715740	Leave	0.317
SRR9715741	Leave	0.157
SRR9715739	Root	0.190
SRR9715742	Root	0.323
SRR9715743	Root	0.234

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.403
SRR8749028	MeJA induced 9h	0.017
SRR8749029	MeJA induced 9h	0.519
SRR8749030	Uninduced	0.020
SRR8749031	Uninduced	0.029
SRR8749032	Uninduced	0.007

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.017
SRR8400027	Control-Root	0.311