Gene detail information of Glyur000003s00001143.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G13682.10LSD1-like2
NRKHN05384.10Lysine-specific histone demethylase 1 like 2 [Glycine soja]
COGYP_007568558.13.00E-66Amine oxidase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
Swissprottr|Q9LID0|LDL2_ARATH0Lysine-specific histone demethylase 1 homolog 2
trEMBLtr|I1KE11|I1KE11_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G38600.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00003148782155273-


Gene family

Gene familysubfamily
Transcription Factors FamilySWI/SNF-SWI3


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003677  DNA binding

GO:0005515  protein binding

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000003s00001143.1PF04433.12SWIRM611456.90E-13
Glyur000003s00001143.1PF01593.19Amino_oxidase1705881.70E-96


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.962
SRR1783600control6.993
SRR1783602moderate drought stress6.217
SRR1811619moderate drought stress6.184

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.656
DRR006520Root Summer glycyrrhizin high producing strain16.086
DRR006521Root Winter glycyrrhizin high producing strain8.682
DRR006522Root Winter glycyrrhizin high producing strain8.533
DRR006523Root Summer glycyrrhizin low producing strain20.360
DRR006524Root Summer glycyrrhizin low producing strain20.545
DRR006525Leaf Summer glycyrrhizin high producing strain5.153
DRR006526Leaf Summer glycyrrhizin high producing strain5.306

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.153
SRR2868004Drought Stress(Tissue:root)13.582
SRR2967015Control (Tissue:root)12.692

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.987
SRR9715740Leave7.093
SRR9715741Leave6.830
SRR9715739Root6.030
SRR9715742Root21.101
SRR9715743Root19.210

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.381
SRR8749028MeJA induced 9h10.423
SRR8749029MeJA induced 9h5.097
SRR8749030Uninduced3.850
SRR8749031Uninduced3.232
SRR8749032Uninduced3.659

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.088
SRR8400027Control-Root12.875

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved