Gene detail information of Glyur000003s00001144.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G23920.10beta-amylase 1
NRXP_004515248.10PREDICTED: beta-amylase 1, chloroplastic-like [Cicer arietinum]
COGYP_005034908.18.00E-49putative beta-amylase precursor [Bacteriovorax marinus SJ]
Swissprottr|Q9LIR6|BAM1_ARATH0Beta-amylase 1, chloroplastic (Precursor)
trEMBLtr|K7MJ07|K7MJ07_SOYBN0Beta-amylase {ECO:0000256|RuleBase:RU000509}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00003158794165838-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH14


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01177E3.2.1.2 EC:3.2.1.2 Starch and sucrose metabolism map00500


Gene Ontology

biological_process

GO:0000272  polysaccharide catabolic process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0016161  beta-amylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000003s00001144.1PF01373.12Glyco_hydro_141075311.20E-129


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control24.404
SRR1783600control24.457
SRR1783602moderate drought stress18.879
SRR1811619moderate drought stress18.649

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain91.905
DRR006520Root Summer glycyrrhizin high producing strain91.081
DRR006521Root Winter glycyrrhizin high producing strain73.585
DRR006522Root Winter glycyrrhizin high producing strain71.690
DRR006523Root Summer glycyrrhizin low producing strain136.102
DRR006524Root Summer glycyrrhizin low producing strain136.794
DRR006525Leaf Summer glycyrrhizin high producing strain231.516
DRR006526Leaf Summer glycyrrhizin high producing strain228.443

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)53.453
SRR2868004Drought Stress(Tissue:root)44.323
SRR2967015Control (Tissue:root)50.688

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave410.476
SRR9715740Leave291.250
SRR9715741Leave440.328
SRR9715739Root172.406
SRR9715742Root290.123
SRR9715743Root254.453

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h77.292
SRR8749028MeJA induced 9h53.564
SRR8749029MeJA induced 9h46.139
SRR8749030Uninduced23.608
SRR8749031Uninduced35.176
SRR8749032Uninduced40.856

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root127.554
SRR8400027Control-Root133.080

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved