Gene detail information of Glyur000003s00001167.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G45660.11.00E-59AGAMOUS-like 20
NRXP_004492667.11.43E-126PREDICTED: MADS-box protein SOC1-like [Cicer arietinum]
Swissprottr|O64645|SOC1_ARATH4.00E-93MADS-box protein SOC1
trEMBLtr|A1XG54|A1XG54_SOYBN4.00E-126Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G45780.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00003337399347744-


Gene family

Gene familysubfamily
Transcription Factors FamilyMIKC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0046983  protein dimerization activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000003s00001167.1PF00319.13SRF-TF10599.50E-28
Glyur000003s00001167.1PF01486.12K-box801711.40E-25


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.451
SRR1783600control7.371
SRR1783602moderate drought stress7.641
SRR1811619moderate drought stress7.517

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain32.950
DRR006520Root Summer glycyrrhizin high producing strain32.862
DRR006521Root Winter glycyrrhizin high producing strain50.610
DRR006522Root Winter glycyrrhizin high producing strain49.365
DRR006523Root Summer glycyrrhizin low producing strain16.665
DRR006524Root Summer glycyrrhizin low producing strain16.891
DRR006525Leaf Summer glycyrrhizin high producing strain15.656
DRR006526Leaf Summer glycyrrhizin high producing strain15.894

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)3.700
SRR2868004Drought Stress(Tissue:root)4.622
SRR2967015Control (Tissue:root)5.517

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave26.330
SRR9715740Leave38.015
SRR9715741Leave31.618
SRR9715739Root6.129
SRR9715742Root10.579
SRR9715743Root11.150

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.729
SRR8749028MeJA induced 9h8.939
SRR8749029MeJA induced 9h13.486
SRR8749030Uninduced15.409
SRR8749031Uninduced20.133
SRR8749032Uninduced17.870

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.196
SRR8400027Control-Root8.651

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved