Gene detail information of Glyur000003s00001187.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G11680.1 | 3.00E-90 | Zinc finger, C3HC4 type (RING finger) family protein |
| NR | XP_003533627.1 | 0 | PREDICTED: E3 ubiquitin-protein ligase At1g63170-like [Glycine max] |
| Swissprot | tr|Q93Z92|RING4_ARATH | 6.00E-129 | E3 ubiquitin-protein ligase At4g11680 |
| trEMBL | tr|I1L6R5|I1L6R5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G40170.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00003 | 444474 | 449717 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000003s00001187.1 | PF13639.1 | zf-RING_2 | 325 | 367 | 1.30E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.176 |
| SRR1783600 | control | 17.439 |
| SRR1783602 | moderate drought stress | 22.207 |
| SRR1811619 | moderate drought stress | 22.251 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.348 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.094 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 42.406 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 40.299 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.791 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.324 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.047 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.265 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 26.873 |
| SRR2868004 | Drought Stress(Tissue:root) | 32.101 |
| SRR2967015 | Control (Tissue:root) | 35.764 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 19.838 |
| SRR9715740 | Leave | 24.120 |
| SRR9715741 | Leave | 24.402 |
| SRR9715739 | Root | 16.551 |
| SRR9715742 | Root | 20.364 |
| SRR9715743 | Root | 22.634 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 32.503 |
| SRR8749028 | MeJA induced 9h | 41.143 |
| SRR8749029 | MeJA induced 9h | 35.279 |
| SRR8749030 | Uninduced | 59.668 |
| SRR8749031 | Uninduced | 92.111 |
| SRR8749032 | Uninduced | 71.314 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 27.518 |
| SRR8400027 | Control-Root | 26.366 |