Gene detail information of Glyur000003s00001197.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G00755.2 | 5.00E-76 | F-box family protein |
| NR | AFK39809.1 | 0 | unknown [Lotus japonicus] |
| Swissprot | tr|Q8LG03|FB345_ARATH | 5.00E-91 | F-box protein At4g00755 |
| trEMBL | tr|I3SHR7|I3SHR7_LOTJA | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK39809.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00003 | 571156 | 575422 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.100 |
| SRR1783600 | control | 14.403 |
| SRR1783602 | moderate drought stress | 11.240 |
| SRR1811619 | moderate drought stress | 11.099 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 31.244 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 30.419 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.655 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 23.894 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.541 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.306 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.306 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.546 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 40.498 |
| SRR2868004 | Drought Stress(Tissue:root) | 39.211 |
| SRR2967015 | Control (Tissue:root) | 37.593 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 22.820 |
| SRR9715740 | Leave | 21.644 |
| SRR9715741 | Leave | 24.558 |
| SRR9715739 | Root | 42.271 |
| SRR9715742 | Root | 32.585 |
| SRR9715743 | Root | 32.563 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 54.408 |
| SRR8749028 | MeJA induced 9h | 30.621 |
| SRR8749029 | MeJA induced 9h | 42.643 |
| SRR8749030 | Uninduced | 35.640 |
| SRR8749031 | Uninduced | 49.455 |
| SRR8749032 | Uninduced | 45.421 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 33.929 |
| SRR8400027 | Control-Root | 34.980 |