Gene detail

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Gene detail information of Glyur000003s00001203.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G10160.1	2.00E-16	RING/U-box superfamily protein
NR	NP_001240876.1	9.78E-125	uncharacterized protein LOC100780922 [Glycine max]
Swissprot	tr\|Q9SN27\|ATL59_ARATH	6.00E-19	E3 ubiquitin-protein ligase ATL59
trEMBL	tr\|C6TGF9\|C6TGF9_SOYBN	4.00E-125	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G40020.1}

Sequence

Transcript Sequence

>Glyur000003s00001203.1
TAGACACCCCAATAGTGTCACCATCTATCCAACACCTTTTATCTCTTTCTATCTCTCTCTTATTGTCACATCATACTACCTATCACATCTATCACTTCTCTTTCTTCTATCTCTTTCTCTCTCTGGGTGTATACACCCATTGAGGTGTCCATGAAACATTTTCCTTCAATTTCTATTTCCATTGCTCTCTCCTCGTCTGTTCCCCCACCACCTTCAATCTCATCTTTTGAGTCACACCAAAGCCACCATGTCCATGATCCCATCTCTTCATAATTCATGGGTTTTTCCCCCTTTCTGCAAATCGTCACCCTGACCCCAAAAAGTTTCCATTTTTCTAACATGGGGGTCTGTTTTTTCCTGTGTTTTCCTTAGCTCTCACCTCCTTTTGTGTCTCTGGACTTTTTGGGGTTGTTAATGTCTGATGGGTACTATCTGGGGTGCGCTTTTGAGCTNGTGTTGAAGAATCTGTGAAGTGGGGGTGTTGGTGTTGTTATTCTTTTCATTTCTAGCTTTTGGAGGAGTTTGTTGTGGTTTTTGCATCTTGTGTGTTGTGGGGTTTGATTTTTGTGAAGTGAGGGATAGTTGGACTTGGAGATGTTGGGTTCAGGTACTAATTTGGTGACCACGGTCATTGGGTTTGGCATGAGTGCCACTTTCATTGTGTTTGTCTGCACCAGAATAATCTGTGGAAGGCTTAGAGGGGGTGCTGATTCTAGGATGATGCATGAGATTGAATCGAGATTTGATTTAGAACAGCCAGAACATCATGTTAATGACCCTGAACCTGAACCAGTTCTGCTTGAAGCAATCCCCACTTTGAAGTTCAATCAAGAGGCTTTCAGTTCCATTGAAGATACACAGTGTGTAATATGTTTGGCAGATTACAAAGAAAGAGAAGTGTTGCGCATCATGCCCAAATGTGGCCACACTTTTCATCTTTCTTGCATTGATATATGGCTGAGAAAACAATCTACCTGTCCGGTGTGCCGTCTGCCATTGAAAAACTCTTCTGAAACAAAACATGTGAGGCCTGTGACATTCACCATGAACCAGTCCCTTAATGAGTCACACACATCTGAAAGGAGTGAAGATATTGAGAGACATGTTGAACCTACTACTGCTAGTAACTCCACACAACCAACTTCTGGAGAACCAGAAGCAAGGCAATGATATGATCTACGAGAGCTAAAGGGGTTGTTTCTTTTCAAAAGAGAGTAGTAGTGTACATTTTCTGCTTCTATAGAGGAATGCTTTCTAATTAGATTGGATTCAAATTCTTTGTTTGTATAATGGCCTTTATATTCCCAACAGTGGTTTCTGCAGCTTACATGTACATAATATCTTTACTTCAGTAGCCTATGCAGGCCTAGGTTTTGATGGATTT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00003	621001	623579	+

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000003s00001203.1	PF13639.1	zf-RING_2	89	132	1.30E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.413
SRR1783600	control	9.674
SRR1783602	moderate drought stress	11.482
SRR1811619	moderate drought stress	11.588

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.039
DRR006520	Root Summer glycyrrhizin high producing strain	30.633
DRR006521	Root Winter glycyrrhizin high producing strain	32.043
DRR006522	Root Winter glycyrrhizin high producing strain	30.992
DRR006523	Root Summer glycyrrhizin low producing strain	31.303
DRR006524	Root Summer glycyrrhizin low producing strain	31.316
DRR006525	Leaf Summer glycyrrhizin high producing strain	33.292
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.089

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	41.222
SRR2868004	Drought Stress(Tissue:root)	51.322
SRR2967015	Control (Tissue:root)	51.430

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	18.334
SRR9715740	Leave	27.330
SRR9715741	Leave	29.091
SRR9715739	Root	8.653
SRR9715742	Root	13.837
SRR9715743	Root	9.862

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.936
SRR8749028	MeJA induced 9h	4.150
SRR8749029	MeJA induced 9h	5.147
SRR8749030	Uninduced	11.963
SRR8749031	Uninduced	10.512
SRR8749032	Uninduced	6.935

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	30.122
SRR8400027	Control-Root	25.912