Gene detail information of Glyur000003s00001221.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G08850.1 | 6.00E-67 | Leucine-rich repeat receptor-like protein kinase family protein |
| NR | XP_007139621.1 | 9.74E-129 | hypothetical protein PHAVU_008G045200g, partial [Phaseolus vulgaris] |
| COG | YP_001192956.1 | 5.00E-25 | two component regulator [Flavobacterium johnsoniae UW101] |
| Swissprot | tr|Q8VZG8|Y4885_ARATH | 3.00E-74 | Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor) |
| trEMBL | tr|V7B232|V7B232_PHAVU | 4.00E-129 | Uncharacterized protein {ECO:0000313|EMBL:ESW11615.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00003 | 695959 | 697943 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.12.4 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000003s00001221.1 | PF13855.1 | LRR_8 | 44 | 105 | 4.30E-08 |
| Glyur000003s00001221.1 | PF12799.2 | LRR_4 | 142 | 179 | 1.70E-06 |
| Glyur000003s00001221.1 | PF00069.20 | Pkinase | 222 | 399 | 1.70E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.001 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.377 |
| SRR9715740 | Leave | 0.131 |
| SRR9715741 | Leave | 0.107 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.153 |
| SRR9715743 | Root | 0.040 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.029 |
| SRR8749028 | MeJA induced 9h | 0.020 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.464 |
| SRR8749031 | Uninduced | 0.243 |
| SRR8749032 | Uninduced | 0.047 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.052 |
| SRR8400027 | Control-Root | 0.043 |