Gene detail information of Glyur000003s00001240.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G24990.13.00E-149Serine/threonine-protein kinase Rio1
NRXP_003625080.10Serine/threonine protein kinase rio1 [Medicago truncatula]
COGYP_001435264.14.00E-34non-specific serine/threonine protein kinase [Ignicoccus hospitalis KIN4/I]
trEMBLtr|Q2HRF6|Q2HRF6_MEDTR0Serine/threonine-protein kinase RIO1 {ECO:0000256|PIRNR:PIRNR038147}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00003781911787549-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K07178RIOK1 EC:2.7.11.1 Ribosome biogenesis in eukaryotes map03008


Gene Ontology

molecular_function

GO:0003824  catalytic activity

GO:0004674  protein serine/threonine kinase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000003s00001240.1PF01163.17RIO11913591.20E-61


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.473
SRR1783600control18.687
SRR1783602moderate drought stress32.814
SRR1811619moderate drought stress33.117

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain30.363
DRR006520Root Summer glycyrrhizin high producing strain30.854
DRR006521Root Winter glycyrrhizin high producing strain40.462
DRR006522Root Winter glycyrrhizin high producing strain39.624
DRR006523Root Summer glycyrrhizin low producing strain21.124
DRR006524Root Summer glycyrrhizin low producing strain21.751
DRR006525Leaf Summer glycyrrhizin high producing strain11.804
DRR006526Leaf Summer glycyrrhizin high producing strain11.791

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)23.967
SRR2868004Drought Stress(Tissue:root)23.771
SRR2967015Control (Tissue:root)25.362

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.977
SRR9715740Leave12.572
SRR9715741Leave11.327
SRR9715739Root1.370
SRR9715742Root13.603
SRR9715743Root9.583

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h35.206
SRR8749028MeJA induced 9h16.970
SRR8749029MeJA induced 9h18.001
SRR8749030Uninduced6.190
SRR8749031Uninduced3.081
SRR8749032Uninduced5.913

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.803
SRR8400027Control-Root17.581

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved