Gene detail information of Glyur000003s00001241.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G61230.1 | 5.00E-62 | GATA type zinc finger transcription factor family protein |
| NR | XP_003551659.1 | 2.68E-98 | PREDICTED: pollen-specific protein SF3-like [Glycine max] |
| Swissprot | tr|Q500W4|PLI2C_ARATH | 1.00E-83 | LIM domain-containing protein PLIM2c {ECO:0000305} |
| trEMBL | tr|I1N3N3|I1N3N3_SOYBN | 1.00E-98 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G46460.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00003 | 789500 | 797493 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LIM |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000003s00001241.1 | PF00412.17 | LIM | 71 | 126 | 4.30E-11 |
| Glyur000003s00001241.1 | PF00412.17 | LIM | 149 | 192 | 1.20E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.166 |
| SRR1783600 | control | 1.728 |
| SRR1783602 | moderate drought stress | 1.632 |
| SRR1811619 | moderate drought stress | 1.251 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.097 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.799 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.321 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.082 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.749 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.999 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.231 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.449 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.178 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.088 |
| SRR2967015 | Control (Tissue:root) | 0.224 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.033 |
| SRR9715741 | Leave | 0.039 |
| SRR9715739 | Root | 0.029 |
| SRR9715742 | Root | 0.069 |
| SRR9715743 | Root | 0.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.127 |
| SRR8749028 | MeJA induced 9h | 0.100 |
| SRR8749029 | MeJA induced 9h | 0.028 |
| SRR8749030 | Uninduced | 0.038 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.414 |
| SRR8400027 | Control-Root | 0.553 |