Gene detail information of Glyur000003s00001243.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G28730.1 | 0 | high mobility group |
| NR | XP_003517023.1 | 0 | PREDICTED: FACT complex subunit SSRP1-like [Glycine max] |
| Swissprot | tr|O04235|SSRP1_VICFA | 0 | FACT complex subunit SSRP1 |
| trEMBL | tr|I1J7R6|I1J7R6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G33240.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00003 | 797978 | 802693 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HMG |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000003s00001243.1 | PF03531.9 | SSrecog | 67 | 214 | 1.20E-60 |
| Glyur000003s00001243.1 | PF03531.9 | SSrecog | 218 | 253 | 2.90E-12 |
| Glyur000003s00001243.1 | PF08512.7 | Rtt106 | 309 | 400 | 4.00E-22 |
| Glyur000003s00001243.1 | PF00505.14 | HMG_box | 530 | 597 | 7.70E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.796 |
| SRR1783600 | control | 10.442 |
| SRR1783602 | moderate drought stress | 9.316 |
| SRR1811619 | moderate drought stress | 9.818 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.299 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.282 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.618 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.858 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.228 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.810 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.389 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.514 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.816 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.321 |
| SRR2967015 | Control (Tissue:root) | 10.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.815 |
| SRR9715740 | Leave | 2.890 |
| SRR9715741 | Leave | 1.851 |
| SRR9715739 | Root | 0.837 |
| SRR9715742 | Root | 5.911 |
| SRR9715743 | Root | 4.185 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.235 |
| SRR8749028 | MeJA induced 9h | 4.543 |
| SRR8749029 | MeJA induced 9h | 4.142 |
| SRR8749030 | Uninduced | 3.591 |
| SRR8749031 | Uninduced | 2.037 |
| SRR8749032 | Uninduced | 2.840 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.900 |
| SRR8400027 | Control-Root | 10.977 |