Gene detail information of Glyur000003s00001247.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G00660.20RNAhelicase-like 8
NRXP_007139882.10hypothetical protein PHAVU_008G066400g [Phaseolus vulgaris]
COGYP_003640197.15.00E-86DEAD/DEAH box helicase [Thermincola potens JR]
Swissprottr|Q8RXK6|RH8_ARATH0DEAD-box ATP-dependent RNA helicase 8
trEMBLtr|V7B5X6|V7B5X6_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW11876.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00003818917825425-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12614DDX6, RCK, DHH1 EC:3.6.4.13 RNA degradation map03018


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000003s00001247.1PF00270.24DEAD1533171.80E-43
Glyur000003s00001247.1PF00271.26Helicase_C3854604.50E-25


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control46.909
SRR1783600control47.068
SRR1783602moderate drought stress31.336
SRR1811619moderate drought stress31.252

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain57.216
DRR006520Root Summer glycyrrhizin high producing strain56.315
DRR006521Root Winter glycyrrhizin high producing strain31.372
DRR006522Root Winter glycyrrhizin high producing strain30.024
DRR006523Root Summer glycyrrhizin low producing strain49.018
DRR006524Root Summer glycyrrhizin low producing strain48.638
DRR006525Leaf Summer glycyrrhizin high producing strain27.597
DRR006526Leaf Summer glycyrrhizin high producing strain27.461

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)62.085
SRR2868004Drought Stress(Tissue:root)54.361
SRR2967015Control (Tissue:root)53.155

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave34.364
SRR9715740Leave41.038
SRR9715741Leave42.680
SRR9715739Root15.325
SRR9715742Root41.808
SRR9715743Root38.356

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h31.975
SRR8749028MeJA induced 9h35.053
SRR8749029MeJA induced 9h20.115
SRR8749030Uninduced19.094
SRR8749031Uninduced24.317
SRR8749032Uninduced16.697

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root62.350
SRR8400027Control-Root64.896

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved