Gene detail information of Glyur000004s00000382.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G31380.1 | 5.00E-66 | salt tolerance homologue |
| NR | KHN30096.1 | 1.48E-127 | Salt tolerance protein [Glycine soja] |
| Swissprot | tr|Q9SID1|BBX25_ARATH | 3.00E-86 | B-box zinc finger protein 25 {ECO:0000303|PubMed:19920209} |
| trEMBL | tr|I1M564|I1M564_SOYBN | 8.00E-129 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G41980.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00004 | 70034 | 72392 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | DBB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000004s00000382.1 | PF00643.19 | zf-B_box | 4 | 43 | 8.10E-05 |
| Glyur000004s00000382.1 | PF00643.19 | zf-B_box | 53 | 95 | 1.30E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.027 |
| SRR1783600 | control | 0.027 |
| SRR1783602 | moderate drought stress | 0.309 |
| SRR1811619 | moderate drought stress | 0.283 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.075 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.078 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.250 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.004 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.320 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.402 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 43.439 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 42.648 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.112 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.373 |
| SRR2967015 | Control (Tissue:root) | 1.699 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 109.700 |
| SRR9715740 | Leave | 119.513 |
| SRR9715741 | Leave | 95.532 |
| SRR9715739 | Root | 0.185 |
| SRR9715742 | Root | 0.046 |
| SRR9715743 | Root | 0.046 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.099 |
| SRR8749029 | MeJA induced 9h | 0.227 |
| SRR8749030 | Uninduced | 0.047 |
| SRR8749031 | Uninduced | 0.001 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.734 |
| SRR8400027 | Control-Root | 0.732 |