Gene detail information of Glyur000004s00000387.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G59470.2 | 5.00E-77 | Far-red impaired responsive (FAR1) family protein |
| NR | XP_007150433.1 | 5.20E-150 | hypothetical protein PHAVU_005G153200g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SZL8|FRS5_ARATH | 5.00E-24 | Protein FAR1-RELATED SEQUENCE 5 |
| trEMBL | tr|V7BWP3|V7BWP3_PHAVU | 2.00E-150 | Uncharacterized protein {ECO:0000313|EMBL:ESW22427.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00004 | 88472 | 91451 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | FAR1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000004s00000387.1 | PF03101.10 | FAR1 | 170 | 257 | 2.20E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.055 |
| SRR1783600 | control | 8.923 |
| SRR1783602 | moderate drought stress | 11.626 |
| SRR1811619 | moderate drought stress | 11.817 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.207 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.024 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.328 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.674 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.990 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.069 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.384 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 21.290 |
| SRR2868004 | Drought Stress(Tissue:root) | 24.373 |
| SRR2967015 | Control (Tissue:root) | 26.115 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 18.633 |
| SRR9715740 | Leave | 18.760 |
| SRR9715741 | Leave | 21.310 |
| SRR9715739 | Root | 2.099 |
| SRR9715742 | Root | 6.012 |
| SRR9715743 | Root | 6.233 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 23.217 |
| SRR8749028 | MeJA induced 9h | 27.921 |
| SRR8749029 | MeJA induced 9h | 20.232 |
| SRR8749030 | Uninduced | 31.462 |
| SRR8749031 | Uninduced | 19.464 |
| SRR8749032 | Uninduced | 19.179 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 22.875 |
| SRR8400027 | Control-Root | 19.680 |