Gene detail information of Glyur000004s00000398.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G59380.11.00E-116farnesyltransferase A
NRXP_003597496.10Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Medicago truncatula]
COGNP_275211.13.00E-06hypothetical protein MTH68, partial [Methanothermobacter thermautotrophicus str. Delta H]
Swissprottr|O24304|FNTA_PEA0Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
trEMBLtr|G7IHS5|G7IHS5_MEDTR0Protein prenyltransferase alpha subunit repeat protein {ECO:0000313|EMBL:AES67747.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00004143583146109-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05955FNTA EC:2.5.1.58 2.5.1.59 Terpenoid backbone biosynthesis map00900


Gene Ontology

biological_process

GO:0018342  protein prenylation


molecular_function

GO:0008318  protein prenyltransferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000004s00000398.1PF01239.17PPTA65942.80E-09
Glyur000004s00000398.1PF01239.17PPTA1011303.40E-10
Glyur000004s00000398.1PF01239.17PPTA1371666.70E-12
Glyur000004s00000398.1PF01239.17PPTA1701973.70E-09
Glyur000004s00000398.1PF01239.17PPTA2122377.70E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control71.161
SRR1783600control71.840
SRR1783602moderate drought stress61.338
SRR1811619moderate drought stress61.146

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain40.951
DRR006520Root Summer glycyrrhizin high producing strain40.334
DRR006521Root Winter glycyrrhizin high producing strain34.186
DRR006522Root Winter glycyrrhizin high producing strain33.066
DRR006523Root Summer glycyrrhizin low producing strain54.686
DRR006524Root Summer glycyrrhizin low producing strain54.370
DRR006525Leaf Summer glycyrrhizin high producing strain11.641
DRR006526Leaf Summer glycyrrhizin high producing strain11.851

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)37.867
SRR2868004Drought Stress(Tissue:root)33.169
SRR2967015Control (Tissue:root)35.844

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave21.083
SRR9715740Leave18.999
SRR9715741Leave24.691
SRR9715739Root18.084
SRR9715742Root35.964
SRR9715743Root31.697

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h24.160
SRR8749028MeJA induced 9h29.032
SRR8749029MeJA induced 9h17.065
SRR8749030Uninduced16.762
SRR8749031Uninduced5.175
SRR8749032Uninduced14.068

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root46.145
SRR8400027Control-Root43.591

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved