Gene detail information of Glyur000004s00000402.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G31510.10IBR domain-containing protein
NRXP_007150419.10hypothetical protein PHAVU_005G152000g [Phaseolus vulgaris]
Swissprottr|Q84RR0|ARI7_ARATH0Probable E3 ubiquitin-protein ligase ARI7
trEMBLtr|V7BZ86|V7BZ86_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW22413.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00004159143169837-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000004s00000402.2PF01485.16IBR2012431.20E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control58.783
SRR1783600control58.894
SRR1783602moderate drought stress97.275
SRR1811619moderate drought stress96.325

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain62.743
DRR006520Root Summer glycyrrhizin high producing strain62.506
DRR006521Root Winter glycyrrhizin high producing strain82.567
DRR006522Root Winter glycyrrhizin high producing strain80.463
DRR006523Root Summer glycyrrhizin low producing strain71.725
DRR006524Root Summer glycyrrhizin low producing strain71.502
DRR006525Leaf Summer glycyrrhizin high producing strain29.532
DRR006526Leaf Summer glycyrrhizin high producing strain29.672

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)58.760
SRR2868004Drought Stress(Tissue:root)73.472
SRR2967015Control (Tissue:root)75.492

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave42.405
SRR9715740Leave46.868
SRR9715741Leave54.841
SRR9715739Root27.698
SRR9715742Root54.627
SRR9715743Root47.125

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h35.083
SRR8749028MeJA induced 9h53.874
SRR8749029MeJA induced 9h30.150
SRR8749030Uninduced36.815
SRR8749031Uninduced32.536
SRR8749032Uninduced26.290

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root71.930
SRR8400027Control-Root70.212

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved