Gene detail information of Glyur000004s00000404.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G44480.1 | 3.00E-57 | beta glucosidase 17 |
| NR | XP_003615724.1 | 3.75E-116 | Beta-glucosidase D7 [Medicago truncatula] |
| COG | YP_004449345.1 | 7.00E-42 | beta-galactosidase [Haliscomenobacter hydrossis DSM 1100] |
| Swissprot | tr|Q7XKV4|BGL12_ORYSJ | 3.00E-82 | Beta-glucosidase 12 (Precursor) |
| trEMBL | tr|G7JZL3|G7JZL3_MEDTR | 1.00E-116 | Glycoside hydrolase family 1 protein {ECO:0000313|EMBL:AES98682.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00004 | 185739 | 202340 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01188 | E3.2.1.21 | EC:3.2.1.21 | Starch and sucrose metabolism | map00500 |
| Cyanoamino acid metabolism | map00460 | |||
| Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000004s00000404.1 | PF00232.13 | Glyco_hydro_1 | 36 | 97 | 2.80E-19 |
| Glyur000004s00000404.1 | PF00232.13 | Glyco_hydro_1 | 104 | 319 | 3.20E-49 |
| Glyur000004s00000404.1 | PF00232.13 | Glyco_hydro_1 | 352 | 390 | 7.20E-13 |
| Glyur000004s00000404.1 | PF00232.13 | Glyco_hydro_1 | 422 | 603 | 6.70E-47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 23.421 |
| SRR1783600 | control | 23.352 |
| SRR1783602 | moderate drought stress | 12.498 |
| SRR1811619 | moderate drought stress | 12.580 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 20.655 |
| SRR2868004 | Drought Stress(Tissue:root) | 27.976 |
| SRR2967015 | Control (Tissue:root) | 32.417 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.035 |
| SRR9715740 | Leave | 0.022 |
| SRR9715741 | Leave | 0.013 |
| SRR9715739 | Root | 16.299 |
| SRR9715742 | Root | 16.779 |
| SRR9715743 | Root | 14.310 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.066 |
| SRR8749028 | MeJA induced 9h | 0.002 |
| SRR8749029 | MeJA induced 9h | 0.028 |
| SRR8749030 | Uninduced | 0.024 |
| SRR8749031 | Uninduced | 0.028 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 29.522 |
| SRR8400027 | Control-Root | 23.977 |