Gene detail information of Glyur000004s00000415.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G13010.10RNA helicase family protein
NRXP_004487236.10PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Cicer arietinum]
COGYP_113939.13.00E-129ATP-dependent helicase HrpA [Methylococcus capsulatus str. Bath]
Swissprottr|Q38953|DHX8_ARATH0Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBLtr|G7IUG0|G7IUG0_MEDTR0Pre-mRNA-splicing factor ATP-dependent RNA helicase {ECO:0000313|EMBL:AES67725.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00004245692255994-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12815DHX38, PRP16 EC:3.6.4.13 Spliceosome map03040


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0004386  helicase activity

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000004s00000415.1PF00270.24DEAD6147664.90E-07
Glyur000004s00000415.1PF00271.26Helicase_C8529412.60E-12
Glyur000004s00000415.1PF04408.18HA2100310917.30E-25
Glyur000004s00000415.1PF07717.11OB_NTP_bind112712273.40E-24


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.956
SRR1783600control17.007
SRR1783602moderate drought stress29.683
SRR1811619moderate drought stress29.416

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain22.802
DRR006520Root Summer glycyrrhizin high producing strain22.509
DRR006521Root Winter glycyrrhizin high producing strain23.138
DRR006522Root Winter glycyrrhizin high producing strain22.444
DRR006523Root Summer glycyrrhizin low producing strain26.156
DRR006524Root Summer glycyrrhizin low producing strain26.015
DRR006525Leaf Summer glycyrrhizin high producing strain14.065
DRR006526Leaf Summer glycyrrhizin high producing strain13.964

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)32.574
SRR2868004Drought Stress(Tissue:root)35.841
SRR2967015Control (Tissue:root)40.637

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.038
SRR9715740Leave22.384
SRR9715741Leave24.301
SRR9715739Root3.344
SRR9715742Root25.008
SRR9715743Root22.802

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h25.795
SRR8749028MeJA induced 9h36.517
SRR8749029MeJA induced 9h22.520
SRR8749030Uninduced25.470
SRR8749031Uninduced14.902
SRR8749032Uninduced17.093

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root33.633
SRR8400027Control-Root30.468

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved