Gene detail information of Glyur000004s00000434.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G51190.1 | 2.00E-153 | Integrase-type DNA-binding superfamily protein |
| NR | XP_006592171.1 | 0 | PREDICTED: AP2-like ethylene-responsive transcription factor PLT2-like isoform X2 [Glycine max] |
| Swissprot | tr|Q5YGP7|PLET2_ARATH | 0 | AP2-like ethylene-responsive transcription factor PLT2 |
| trEMBL | tr|I1LQI0|I1LQI0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G06010.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00004 | 359625 | 363646 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AP2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000004s00000434.1 | PF00847.15 | AP2 | 176 | 232 | 8.20E-09 |
| Glyur000004s00000434.1 | PF00847.15 | AP2 | 277 | 326 | 1.60E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.061 |
| SRR1783600 | control | 0.062 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.581 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.722 |
| SRR2967015 | Control (Tissue:root) | 4.349 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.280 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 36.929 |
| SRR8749028 | MeJA induced 9h | 2.752 |
| SRR8749029 | MeJA induced 9h | 3.583 |
| SRR8749030 | Uninduced | 0.380 |
| SRR8749031 | Uninduced | 0.257 |
| SRR8749032 | Uninduced | 1.217 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.154 |
| SRR8400027 | Control-Root | 0.127 |