Gene detail information of Glyur000004s00000442.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G57670.1 | 9.00E-100 | C2H2-type zinc finger family protein |
| NR | ACU19877.1 | 1.04E-173 | unknown [Glycine max] |
| Swissprot | tr|Q8W031|ZWIP5_ARATH | 6.00E-127 | Zinc finger protein WIP5 |
| trEMBL | tr|C6TDH5|C6TDH5_SOYBN | 4.00E-174 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU19877.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00004 | 388326 | 391342 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000004s00000442.1 | PF13894.1 | zf-C2H2_4 | 197 | 216 | 0.0011 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 91.699 |
| SRR1783600 | control | 91.915 |
| SRR1783602 | moderate drought stress | 64.352 |
| SRR1811619 | moderate drought stress | 64.526 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 64.146 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 63.417 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 21.338 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.926 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 77.519 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 77.828 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.683 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.684 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.581 |
| SRR2868004 | Drought Stress(Tissue:root) | 16.597 |
| SRR2967015 | Control (Tissue:root) | 21.118 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.179 |
| SRR9715740 | Leave | 0.510 |
| SRR9715741 | Leave | 0.392 |
| SRR9715739 | Root | 22.631 |
| SRR9715742 | Root | 27.694 |
| SRR9715743 | Root | 24.989 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.573 |
| SRR8749028 | MeJA induced 9h | 37.248 |
| SRR8749029 | MeJA induced 9h | 13.183 |
| SRR8749030 | Uninduced | 19.992 |
| SRR8749031 | Uninduced | 11.480 |
| SRR8749032 | Uninduced | 6.958 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 39.960 |
| SRR8400027 | Control-Root | 41.572 |