Gene detail

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Gene detail information of Glyur000004s00000447.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G34890.1	xanthine dehydrogenase 1
NR	XP_004486961.1	PREDICTED: xanthine dehydrogenase 1-like isoform X1 [Cicer arietinum]
COG	YP_005371681.1	putative xanthine dehydrogenase [Corallococcus coralloides DSM 2259]
Swissprot	tr\|Q8GUQ8\|XDH1_ARATH	Xanthine dehydrogenase 1
trEMBL	tr\|G7IUC2\|G7IUC2_MEDTR	Xanthine dehydrogenase/oxidase {ECO:0000313\|EMBL:AES67687.2}

Sequence

Transcript Sequence

>Glyur000004s00000447.1
TGCGGGTTCCAAATACTAGTTAAATATTCATTTTGTCAAGTCATTGGCCTCAGTTGATAAGCTTGAGACGCAGATTGGAGAGTTGGAGTAGGACTCAGGAGATTCAATCTAAAGTCGGTTTGATCCGAATTCACAAGATTTGATTGGTTGTGTTATATTTTTTCAGTTATAACAGTAGAACAGAAGAAAAAGGTGGTGGTGTTGTTCCATTCTATTTGCGAGCAGTGAAATGGGATCAATGGAAGAGGCGGGGCAAGATTTGAAGGTGTCGTCGAACGAAGCCATCCTCTATGTGAACGGAGTTCGTAGAGTGTTGCCTGATGGATTCGCTCATTTGACTCTTCTTGAGTATCTCAGAGATTTTCTCCTTGGTGAAGCTAAACTACTGATTACAGTTTTCCACTCTCTCTTTGGTGTAAAAGATATAGGTCTGACAGGGACTAAACTAGGATGCGGTGAAGGTGGTTGTGGAGCTTGCACGGTCATGGTTTCTCATTATGATACAAATTTGAGGAAATGCTTACACTATGCTATCAATGCTTGCTTAGCACCTCTATATTCTGTAGAAGGGATGCATGTGATTACAGTGGAGGGAGTTGGGAGCTGCAAGCGTGGATTGCACCCTATCCAGGAATCTCTGGCTTCTGCTCATGGTTCACAATGTGGATTTTGTACACCTGGTTTTGTCATGTCCATGTATGCGTTGTTGAGGTCAAGTCAAACACCACCTAGTGAAGAACAAATTGAAGAATGCCTTGCTGGAAATTTATGCCGTTGCACTGGTTACAGACCAATACTTGATGCATTCCAGGTCTTTGCCAAAACTAACAATATCTTATATACTGGGGTTTCTTCATTGAGCCTTCAAGAAGGCCAGTCTGTTTGCCCATCAACTGGAAAACCCTGTACGTGTAATTTAAATGATGTAAATGATAAATGTGTAGTCAGTGATGGTAGATATAAACCTACTTCCTATAATGAAGTAGACGGGACCAAATATACAGAAAAAGAACTTATTTTTCCTCCCGAACTGTTGTTAAGGAAACCAACCTCCTTAAATTTGACTGGATTTAGTGGGCTAATGTGGTATCGGCCTTTAACACTTCAACATGTATTGGATTTAAAAGCCAAATATCCTGATGCAAAGTTGCTAGTCGGTAATTCTGAGGTGGGAATTGAGATGAGACTAAAGAGAATGCAATATCGGGTTCTGATTTCTGNAATGCATGTGCCAGAACTAAATGTTTTGGATGCTAAGGATGATGGCATAGAGATAGGTGCTGCAGTGAGATTATCCAATCTCTTGAATTTTTTCAGAAAGGTTGTAACTGAGCGAGCTGCTCATGAAACATCATCTTGTAAAGCCTTCATTGAGCAACTGAAATGGTTTGCTGGAACACAGATAAGAAATGTTGCATCAGTTGGTGGAAATATATGTACTGCCAGCCCAATATCGGACTTGAATCCTCTCTGGATGGCAGCTAGAGCAAAGTTTCGAATTGTTGACTCAAAAGGAAACATCAGGACAGTACTAGCAGAGAATTTCTTTTTGGGTTATCGTAAGGTGGATTTGGCACGTGGTGAAATCCTGCTGTCAATATTTTTGCCATGGAATAGGACCTTTGAGTTTGTGAAAGAATTTAAACAGTCCCATAGAAGGGATGATGATATTGCAATTGTAAATGCAGGTATTCGTGTTCATCTTCAGGAACATAGTGATAACTGGGTGGTTGCTGATGCATCAATTGTTTATGGTGGGGTGGCTCCATATTCGCTTTCTGCAACAAAAACTAAGGAATTTCTCATAGGAAAGATTTGGGACCAAGATCTGTTGGAAAATGCATTGAAAGTCCTACAAAAGGATATAGCACTCAAGGAAGATGCTCCTGGTGGAATGGTAGAGTTCCGGAAATCTTTGACTCTAAGTTTCTTTTTTAAATTTTTTCTGTGGGTGTCTCATCAAATGGATGGCATCAAAGAGTGTATACCGTTATCCCATCTATCTGCTGTGCACTCAGTCCACCGCCCACCAATTACAGGATCTCAGGACTATGAAATCATGAAACATGGGACATCTGTGGGTTCTCCTGAGGTTCATCTATCTTCCAGACTTCAGGTTACAGGAGAAGCATTATATGCTGATGACACACCAATGCCTCCAAATGGTTTGCATGCTGCCTTACTTTTGAGTAGAAAACCCCATGCCCGAATACTTTCAATTGATGGTTCAGGGGCCAGGTCTTCACCTGGATTTGNGGGCTTGTTTCTGGCCAAAGATATACCAGGTGATAATAAAATTGGACCGGTTGTTGATGATGAGGAGCTTTTTGCTGTAGAATATGTCACTTGTGTGGGTCAGGTAATAGGAATAGTTGTGGCTGATACTCATGAAAATGCAAAGATAGCAGCAGGAAAAGTTCATGTTGAGTATGAAGAGCTCCCAGCCATCCTGTCAATACAGGATGCCATCAATGCTGGAAGTTTTCATCCCAACACAGAAAAGTGTTTGAGTAAAGGTGATGTTGATCACTGTTTTCAGTCAGGTCAGTGTGACAGAATAATTGAAGGGGAAGTTCAGGTGGGAGGTCAGGAACACTTTTATCTGGAGCCACATAGCAGTTTGATATGGACAGTGGATGGTGGAAACGAAGTTCATATGCTATCATCTACTCAAGCCCCTCAGAAGCACCAGAAATATGTTTCTCATGTTCTTGGTCTTCCCATGTCAAAGGTAGTTTGCAAAACAAAAAGAATTGGTGGNGGATTTGGGGGAAAGGAGACAAGATCAGCCTTTATTGCTGCGGCAGCTTCAGTTCCATCATATCTGTTGAATCAACCGGTGAAAATCACACTGGACCGAGATGTAGACATGATGATATCTGGGCAACGCCATAGTTTTTTGGGGAAGTATAAGGTTGGATTTACAAATGATGGGAGGGTGCTTGCACTGGATCTTGAAATTTATAACAATGCTGGAAATTCACTTGATCTGTCACTTGCTATCCTTGAACGTGCTATGTTTCATTCGGATAATGTGTATGAAATACCAAATATGAGGATAACGGGAAGGGTTTGCTTCACTAATTTCCCTAGCAACACTGCTTTCCGTGGATTTGGTGGCCCTCAAGGCATGCTTATTACTGAAAACTGGATTCAGAGGATTGCTGCAGAACTCAAGATGAGCCCAGAAGTGATAAGGGAAATTAACTTTCAAGGTGAAGGATCTGTTATGCATTACGGCCAGAAACTTGAGCACTGCACACTAGCCCAGCTATGGAATGAACTTAAGTTATCCTGTGACTTTGTGAAGGCACGTGAAGAAGTTGACCAATTCAATGATCATAATCGCTGGAGGAAGCGTGGCATTGCTATGGTTCCTACTAAGTTTGGTATATCCTTTACAACAAAGCTTATGAACCAGGCAGGTGCTCTGGTTCATGTCTATACGGATGGAACTGTTTTAGTTACTCATGGGGGTGTAGAAATGGGGCAAGGTTTGCATACAAAAGTTGCCCAGATTGCTGCATCAGCTTTCAATATCCCCCTTAGTTCTGTTCCTAATTCTTCTCCAACAGCAGCTTCNGCAAGTTCTGATATGTATGGAGCAGCGGTTTTAGATGCATGTGAGCAAATAATGGCACGCATGGAACCTATTGCTTCTCGACATAACTTCAACTCATTTGCTGAGCTAGCTATCGCATGCTATGCAGAGCGAATAGACCTTTCTGCCCATGGATTTTATATTACACCTGATATTGGTTTTGATTGGATTACGGGTAAAGGAAAACCTTTTAGGTATTTCACTTATGGGGCTGCATTTGCTGAGGTTGAAATTGACACCTTGACTGGAGATTTTCACACCAGGGTGGCAAACATATTTTTGGATCTCGGTTATTCTCTGAACCCAGCGATAGATGTTGGACAGATCGAAGGAGCTTTTATTCAAGGTTTGGGTTGGGTAGCTTTAGAAGAACTTAAATGGGGAGATGGAGCGCATAAATGGATCCCGCCTGGTTGCCTTTACACTTGTGGACCTGGAGCTTATAAAATTCCTTCTATAAATGATGTTCCCTTCAAATTTAATGTCTCACTTCTGAAGGGTCATCCAAATGTTAAGGCCATCCATTCATCTAAAGCAGTTGGTGAGCCTCCATTTTTCCTAGCATCAGCTGTGTTCTTTGCCATCAAGGATGCCATCAGAGCTGCAAGAGTTGAAACGGGATGCACTGACTGGTTTCCTCTTGATAGTCCAGCAACTCCTGAGAGAATTCGGATGGCTTGTTTAGATGAATTTATATCTTCTTTCGTTAATTCGGATTTCCATCCCAAACTTAGTGTTTGANACTCTGTTTATTCATTTGTTAAATTTCTTAGCATATCAACATGTTGAGGCTGACAAAGATAGTCTCGCATGTGTATACAGTTATAGAAGATAAGTTATATAGGGGCGAGAGAGCATCAATTCATGGACTCAAGCCTAGAGAATGTCCAGATTCTCACCTCTCCATATGATGTAGCAATTGCGGCACTGCAGCGAAGCAANGGCCACTTTCTGGCTCAATTTAATAAATGTATTTTTATATTA

Protein Sequence

>Glyur000004s00000447.1
MGSMEEAGQDLKVSSNEAILYVNGVRRVLPDGFAHLTLLEYLRDFLLGEAKLLITVFHSLFGVKDIGLTGTKLGCGEGGCGACTVMVSHYDTNLRKCLHYAINACLAPLYSVEGMHVITVEGVGSCKRGLHPIQESLASAHGSQCGFCTPGFVMSMYALLRSSQTPPSEEQIEECLAGNLCRCTGYRPILDAFQVFAKTNNILYTGVSSLSLQEGQSVCPSTGKPCTCNLNDVNDKCVVSDGRYKPTSYNEVDGTKYTEKELIFPPELLLRKPTSLNLTGFSGLMWYRPLTLQHVLDLKAKYPDAKLLVGNSEVGIEMRLKRMQYRVLISXMHVPELNVLDAKDDGIEIGAAVRLSNLLNFFRKVVTERAAHETSSCKAFIEQLKWFAGTQIRNVASVGGNICTASPISDLNPLWMAARAKFRIVDSKGNIRTVLAENFFLGYRKVDLARGEILLSIFLPWNRTFEFVKEFKQSHRRDDDIAIVNAGIRVHLQEHSDNWVVADASIVYGGVAPYSLSATKTKEFLIGKIWDQDLLENALKVLQKDIALKEDAPGGMVEFRKSLTLSFFFKFFLWVSHQMDGIKECIPLSHLSAVHSVHRPPITGSQDYEIMKHGTSVGSPEVHLSSRLQVTGEALYADDTPMPPNGLHAALLLSRKPHARILSIDGSGARSSPGFXGLFLAKDIPGDNKIGPVVDDEELFAVEYVTCVGQVIGIVVADTHENAKIAAGKVHVEYEELPAILSIQDAINAGSFHPNTEKCLSKGDVDHCFQSGQCDRIIEGEVQVGGQEHFYLEPHSSLIWTVDGGNEVHMLSSTQAPQKHQKYVSHVLGLPMSKVVCKTKRIGGGFGGKETRSAFIAAAASVPSYLLNQPVKITLDRDVDMMISGQRHSFLGKYKVGFTNDGRVLALDLEIYNNAGNSLDLSLAILERAMFHSDNVYEIPNMRITGRVCFTNFPSNTAFRGFGGPQGMLITENWIQRIAAELKMSPEVIREINFQGEGSVMHYGQKLEHCTLAQLWNELKLSCDFVKAREEVDQFNDHNRWRKRGIAMVPTKFGISFTTKLMNQAGALVHVYTDGTVLVTHGGVEMGQGLHTKVAQIAASAFNIPLSSVPNSSPTAASASSDMYGAAVLDACEQIMARMEPIASRHNFNSFAELAIACYAERIDLSAHGFYITPDIGFDWITGKGKPFRYFTYGAAFAEVEIDTLTGDFHTRVANIFLDLGYSLNPAIDVGQIEGAFIQGLGWVALEELKWGDGAHKWIPPGCLYTCGPGAYKIPSINDVPFKFNVSLLKGHPNVKAIHSSKAVGEPPFFLASAVFFAIKDAIRAARVETGCTDWFPLDSPATPERIRMACLDEFISSFVNSDFHPKLSV

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00004	410905	422132	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00106	XDH	EC:1.17.1.4 1.17.3.2	Purine metabolism	map00230
			Caffeine metabolism	map00232
			Drug metabolism - other enzymes	map00983
			Peroxisome	map04146

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function GO:0003824 catalytic activity GO:0005506 iron ion binding GO:0008762 UDP-N-acetylmuramate dehydrogenase activity GO:0009055 electron carrier activity GO:0016491 oxidoreductase activity GO:0016614 oxidoreductase activity, acting on CH-OH group of donors GO:0046872 metal ion binding GO:0050660 flavin adenine dinucleotide binding GO:0051536 iron-sulfur cluster binding GO:0051537 2 iron, 2 sulfur cluster binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000004s00000447.1	PF01799.15	Fer2_2	119	194	2.70E-28
Glyur000004s00000447.1	PF00941.16	FAD_binding_5	285	461	6.50E-51
Glyur000004s00000447.1	PF03450.12	CO_deh_flav_C	470	575	1.60E-31
Glyur000004s00000447.1	PF01315.17	Ald_Xan_dh_C	631	738	1.90E-29
Glyur000004s00000447.1	PF02738.13	Ald_Xan_dh_C2	747	1281	1.40E-165

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.404
SRR1783600	control	4.450
SRR1783602	moderate drought stress	6.852
SRR1811619	moderate drought stress	6.703

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.612
DRR006520	Root Summer glycyrrhizin high producing strain	5.459
DRR006521	Root Winter glycyrrhizin high producing strain	14.164
DRR006522	Root Winter glycyrrhizin high producing strain	13.669
DRR006523	Root Summer glycyrrhizin low producing strain	9.754
DRR006524	Root Summer glycyrrhizin low producing strain	9.476
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.826
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.708

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	28.515
SRR2868004	Drought Stress(Tissue:root)	36.690
SRR2967015	Control (Tissue:root)	54.342

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	14.565
SRR9715740	Leave	14.813
SRR9715741	Leave	21.678
SRR9715739	Root	3.310
SRR9715742	Root	9.252
SRR9715743	Root	7.650

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.050
SRR8749028	MeJA induced 9h	46.117
SRR8749029	MeJA induced 9h	16.492
SRR8749030	Uninduced	34.498
SRR8749031	Uninduced	38.243
SRR8749032	Uninduced	26.821

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	15.123
SRR8400027	Control-Root	13.324