Gene detail information of Glyur000004s00000450.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G14700.10origin recognition complex 1
NRXP_003543534.10PREDICTED: origin recognition complex subunit 1-like isoform 1 [Glycine max]
COGYP_003482375.12.00E-21orc1/cdc6 family replication initiation protein [Aciduliprofundum boonei T469]
Swissprottr|Q710E8|ORC1A_ARATH0Origin of replication complex subunit 1A {ECO:0000303|PubMed:16179646}
trEMBLtr|I1M507|I1M507_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G41490.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00004434284440284-


Gene family

Gene familysubfamily
Transcription Factors FamilyPHD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0003682  chromatin binding

GO:0005515  protein binding

GO:0005524  ATP binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000004s00000450.1PF00628.24PHD2142565.00E-07
Glyur000004s00000450.1PF01426.13BAH2863821.70E-14
Glyur000004s00000450.1PF00004.24AAA5126561.40E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.681
SRR1783600control4.772
SRR1783602moderate drought stress1.868
SRR1811619moderate drought stress1.883

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.811
DRR006520Root Summer glycyrrhizin high producing strain2.791
DRR006521Root Winter glycyrrhizin high producing strain0.488
DRR006522Root Winter glycyrrhizin high producing strain0.563
DRR006523Root Summer glycyrrhizin low producing strain1.821
DRR006524Root Summer glycyrrhizin low producing strain1.788
DRR006525Leaf Summer glycyrrhizin high producing strain0.663
DRR006526Leaf Summer glycyrrhizin high producing strain0.689

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.413
SRR2868004Drought Stress(Tissue:root)7.079
SRR2967015Control (Tissue:root)7.608

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.724
SRR9715740Leave1.339
SRR9715741Leave2.085
SRR9715739Root0.111
SRR9715742Root1.701
SRR9715743Root1.178

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.232
SRR8749028MeJA induced 9h14.885
SRR8749029MeJA induced 9h8.322
SRR8749030Uninduced2.869
SRR8749031Uninduced1.912
SRR8749032Uninduced1.243

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.586
SRR8400027Control-Root8.486

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved