Gene detail

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Gene detail information of Glyur000004s00000451.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G36250.1	1.00E-158	aldehyde dehydrogenase 3F1
NR	XP_003597427.1	0	Aldehyde dehydrogenase family 3 member F1 [Medicago truncatula]
COG	YP_007068020.1	1.00E-139	aldehyde dehydrogenase [Calothrix sp. PCC 7507]
Swissprot	tr\|Q70E96\|AL3F1_ARATH	0	Aldehyde dehydrogenase family 3 member F1
trEMBL	tr\|G7IUB3\|G7IUB3_MEDTR	0	Aldehyde dehydrogenase {ECO:0000256\|PIRNR:PIRNR036492}

Sequence

Transcript Sequence

>Glyur000004s00000451.1
AGATTATATATACTAGTCGGCAGTTGCTGAGTTTTGGTGCATCAGATATTCTCTGTTTTATGACATGGAGTTCTCATCAGTGGAAGCTTTGGAGAGAGATCTAAAGAACACGAGGAAGTATTATGGGAGTGGGAAAACAAAAGAAGCATCATGGAGAGAATCACAGCTAAAAGGGTTGCGTAGTTTTGTCATGGAAAAAGAAGAAGAAATCATGAAGGCCCTCAAGGAGGATTTGGGGAAGCATCAAGTTGAGGCTTTTAGAGATGAGGTTGGAACGTTGATGAAGTCCTTGAATATNGCAATCAAGTCTTTGAAAAACTGGATGGCGTGCAAAGAGGCCAAACTGCCACGAATAGCACTGCTTTCCAGTGCAGAAATTGTTCCTGAGCCTCTTGGTCTCGTTCTCATAATCTCATCATGGAATTTTCCCTTTGGACTGTCATTGGAACCACTAATAGGAGCTGTGGCTGCTGGAAACACTGTAGTTCTAAAGCCTTCAGAGATTTCCCCAGCTAGTTCTTCTCTTCTAGCCACTGTCCTCCCAAATTACTTGGACAGCAATGGCATTAAGGTCATTGAAGGTGGACCNGAGGTGGGTGAGCAACTCCTGCAGCAAAGATGGGACAAAATCTTCTTCACAGGAAGTGCAAGGGTGGGGCGGATTGTTATGTCTGCAGCAGTGGAGCATCTGACGCCTGTGATTTTGGAGTTAGGTGGAAAATGTCCAGCACTGGTTGANTCCCTTTCATCCTCTTGGGACAGAGAGATGGCTGTGAAACGAATCTTGGTGGCAAAGTTTGGGGCTTGTGCGGGACAAGCATGCATAGCAATCGATTACATCCTTGTAGAAAAGAGTTTCAGTTCTACATTGGTGGCATTAATGAAGGAAGGGATTAAGAAAATGTTTGGAGAAAACCCGAAAGTATCCAACACTATTGCAAGGATAGTTAATAAGAAACAATTCTCGAGACTCAAGTGTTTTCTCACCGAGCCTAAGGTCAAAGAATCGATGGTTTTTGGTGGTTCCATGGACGATGATGACTTATTTATCGAACCAACAATATTACTGGATCCACCACTTGAATCAGCAATCATGGCAGAGGAAATCTTTGCACCCGTGCTTCCCATCATCACCCTAGAGAAGATTGAAGACGGTATTGAATTCATAAACTCAAAGCCTAAGCCTCTAGCAATTTATGCCTTCACAAAAGACAAAACTCTGCAGAGGAGAATGTTAACTGAAACATCATCTGGGAGTATTGTATTCAACGATGCAATTCTACAGTATGTAGCGGATACCCTTCCATTTGGAGGAGTTGGTGAATGTGGATTTGGCAGGTACCACGGGAAGTTCTCGTTTGACGCGTTCAGTCACCATAAGGCTGTGGCCAGAAGAAGTTTCTACACCGATTTTTGGTTCAGGTTTCCTCCATGGACTCTTAACAAGCTCCAACTACTCGACGAAGCTTACAACTTAGACTATATTGGAATACTCCTTGTCCTGCTCGGCATAAAGAGATCGAAACGCACGCTCCATGTCTCAGACTTGTAATTGATCATTGGCAATACAGTTTCCTTCATTTCTCTTTCTCTTTTTTTTTTTTTTTCCAGTGACCACCGCAATAAGGATAGGTGGTTGAAGCTATTATTATGTATTTATTTCTATGCAATTATATTAAAGTGTGTGTACTTTTCTTTGGTTCTATGTGAGTNAAGAGATGAGCCACACAAATGTGCGGGAAACACCGGAAAAACGACAATGACACAACAGAGACANACTATATGAAGGTGAGTTAAGATTT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00004	442528	446304	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00128	ALDH	EC:1.2.1.3	Glycolysis / Gluconeogenesis	map00010
			Ascorbate and aldarate metabolism	map00053
			Pyruvate metabolism	map00620
			Fatty acid degradation	map00071
			Glycerolipid metabolism	map00561
			Valine, leucine and isoleucine degradation	map00280
			Lysine degradation	map00310
			Arginine and proline metabolism	map00330
			Histidine metabolism	map00340
			Tryptophan metabolism	map00380
			beta-Alanine metabolism	map00410
			Insect hormone biosynthesis	map00981
			Limonene and pinene degradation	map00903
			Chloroalkane and chloroalkene degradation	map00625

Gene Ontology

biological_process

GO:0006081 cellular aldehyde metabolic process

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

molecular_function GO:0004030 aldehyde dehydrogenase [NAD(P)+] activity GO:0016491 oxidoreductase activity GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000004s00000451.1	PF00171.17	Aldedh	16	441	6.00E-79

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.003
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.061
DRR006522	Root Winter glycyrrhizin high producing strain	0.060
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.137
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.958

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.001
SRR2868004	Drought Stress(Tissue:root)	0.000
SRR2967015	Control (Tissue:root)	0.028

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	34.117
SRR9715740	Leave	12.775
SRR9715741	Leave	12.385
SRR9715739	Root	0.000
SRR9715742	Root	0.153
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.001
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.000
SRR8400027	Control-Root	0.129