Gene detail information of Glyur000004s00000452.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G12870.1 | 3.00E-50 | myb domain protein 46 |
| NR | XP_006590966.1 | 4.58E-141 | PREDICTED: transcription factor MYB46-like [Glycine max] |
| Swissprot | tr|Q9LXV2|MYB46_ARATH | 2.00E-68 | Transcription factor MYB46 |
| trEMBL | tr|K7LPK7|K7LPK7_SOYBN | 2.00E-141 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G14200.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00004 | 463670 | 465793 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000004s00000452.1 | PF00249.26 | Myb_DNA-binding | 25 | 72 | 3.80E-12 |
| Glyur000004s00000452.1 | PF00249.26 | Myb_DNA-binding | 78 | 121 | 4.40E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.129 |
| SRR1783600 | control | 0.066 |
| SRR1783602 | moderate drought stress | 0.067 |
| SRR1811619 | moderate drought stress | 0.065 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.750 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.473 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.096 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.096 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.984 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.996 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.623 |
| SRR2967015 | Control (Tissue:root) | 0.438 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.214 |
| SRR9715740 | Leave | 0.433 |
| SRR9715741 | Leave | 0.058 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.051 |
| SRR9715743 | Root | 0.162 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.659 |
| SRR8400027 | Control-Root | 0.561 |