Gene detail information of Glyur000004s00000474.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G46620.14.00E-62zinc finger (C3HC4-type RING finger) family protein
NRXP_004486987.10PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cicer arietinum]
Swissprottr|P0CH30|RING1_GOSHI7.00E-35E3 ubiquitin-protein ligase RING1
trEMBLtr|Q2HS43|Q2HS43_MEDTR1.00E-169Zinc finger, RING-type; Thioredoxin-related {ECO:0000313|EMBL:ABD33128.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00004577001578041+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000004s00000474.1PF14369.1zf-RING_311423.30E-13
Glyur000004s00000474.1PF13639.1zf-RING_21752173.60E-13
Glyur000004s00000474.1PF06547.7DUF11172393393.80E-33


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.652
SRR1783600control13.668
SRR1783602moderate drought stress19.740
SRR1811619moderate drought stress19.334

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain304.846
DRR006520Root Summer glycyrrhizin high producing strain300.283
DRR006521Root Winter glycyrrhizin high producing strain33.106
DRR006522Root Winter glycyrrhizin high producing strain33.002
DRR006523Root Summer glycyrrhizin low producing strain440.147
DRR006524Root Summer glycyrrhizin low producing strain439.388
DRR006525Leaf Summer glycyrrhizin high producing strain50.508
DRR006526Leaf Summer glycyrrhizin high producing strain47.247

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)46.701
SRR2868004Drought Stress(Tissue:root)103.888
SRR2967015Control (Tissue:root)311.765

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave171.728
SRR9715740Leave216.283
SRR9715741Leave163.968
SRR9715739Root907.050
SRR9715742Root480.514
SRR9715743Root490.132

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h272.930
SRR8749028MeJA induced 9h278.819
SRR8749029MeJA induced 9h255.787
SRR8749030Uninduced326.068
SRR8749031Uninduced286.851
SRR8749032Uninduced251.999

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root88.606
SRR8400027Control-Root167.678

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved