Gene detail information of Glyur000004s00000475.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G55530.1 | 1.00E-76 | RING/U-box superfamily protein |
| NR | AFK35739.1 | 4.02E-147 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9M2S6|SDIR1_ARATH | 9.00E-117 | E3 ubiquitin-protein ligase SDIR1 |
| trEMBL | tr|I3S647|I3S647_LOTJA | 2.00E-147 | Uncharacterized protein {ECO:0000313|EMBL:AFK35739.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00004 | 585069 | 589265 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000004s00000475.1 | PF13639.1 | zf-RING_2 | 211 | 253 | 1.60E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.082 |
| SRR1783600 | control | 1.042 |
| SRR1783602 | moderate drought stress | 0.847 |
| SRR1811619 | moderate drought stress | 0.862 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.468 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.437 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.869 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.244 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.025 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.085 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.113 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.055 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.116 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.859 |
| SRR2967015 | Control (Tissue:root) | 0.716 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.122 |
| SRR9715740 | Leave | 0.310 |
| SRR9715741 | Leave | 0.080 |
| SRR9715739 | Root | 0.255 |
| SRR9715742 | Root | 0.133 |
| SRR9715743 | Root | 0.440 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.569 |
| SRR8749028 | MeJA induced 9h | 2.903 |
| SRR8749029 | MeJA induced 9h | 2.870 |
| SRR8749030 | Uninduced | 3.069 |
| SRR8749031 | Uninduced | 2.525 |
| SRR8749032 | Uninduced | 1.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.989 |
| SRR8400027 | Control-Root | 0.872 |