Gene detail information of Glyur000004s00000484.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G07530.1 | 5.00E-177 | SCARECROW-like 14 |
| NR | XP_004486993.1 | 0 | PREDICTED: uncharacterized protein LOC101504630 [Cicer arietinum] |
| Swissprot | tr|Q9XE58|SCL14_ARATH | 0 | Scarecrow-like protein 14 |
| trEMBL | tr|G7IRV1|G7IRV1_MEDTR | 0 | GRAS family transcription factor {ECO:0000313|EMBL:AES67624.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00004 | 628787 | 638699 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GRAS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000004s00000484.1 | PF03514.9 | GRAS | 361 | 733 | 3.50E-113 |
| Glyur000004s00000484.1 | PF03514.9 | GRAS | 1046 | 1271 | 1.50E-57 |
| Glyur000004s00000484.1 | PF03514.9 | GRAS | 1273 | 1381 | 8.00E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.387 |
| SRR1783600 | control | 12.442 |
| SRR1783602 | moderate drought stress | 14.290 |
| SRR1811619 | moderate drought stress | 14.219 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 43.570 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 41.779 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.439 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.775 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 42.367 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 40.569 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.826 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.806 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 23.361 |
| SRR2868004 | Drought Stress(Tissue:root) | 43.275 |
| SRR2967015 | Control (Tissue:root) | 58.827 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 29.749 |
| SRR9715740 | Leave | 29.140 |
| SRR9715741 | Leave | 40.020 |
| SRR9715739 | Root | 37.035 |
| SRR9715742 | Root | 82.494 |
| SRR9715743 | Root | 73.588 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.562 |
| SRR8749028 | MeJA induced 9h | 72.179 |
| SRR8749029 | MeJA induced 9h | 32.507 |
| SRR8749030 | Uninduced | 42.868 |
| SRR8749031 | Uninduced | 50.467 |
| SRR8749032 | Uninduced | 23.006 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 19.086 |
| SRR8400027 | Control-Root | 19.968 |