Gene detail information of Glyur000004s00000485.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G07530.1 | 2.00E-140 | SCARECROW-like 14 |
| NR | XP_003597365.1 | 0 | GRAS family transcription factor [Medicago truncatula] |
| Swissprot | tr|Q9XE58|SCL14_ARATH | 0 | Scarecrow-like protein 14 |
| trEMBL | tr|G7IHQ3|G7IHQ3_MEDTR | 0 | GRAS family transcription factor {ECO:0000313|EMBL:AES67616.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00004 | 643125 | 645098 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GRAS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000004s00000485.1 | PF03514.9 | GRAS | 278 | 654 | 7.50E-107 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.111 |
| SRR1783600 | control | 0.111 |
| SRR1783602 | moderate drought stress | 0.154 |
| SRR1811619 | moderate drought stress | 0.114 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.369 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.364 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.057 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.055 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.176 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.903 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.034 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.835 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.357 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.845 |
| SRR2967015 | Control (Tissue:root) | 5.897 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 51.696 |
| SRR9715740 | Leave | 30.126 |
| SRR9715741 | Leave | 33.148 |
| SRR9715739 | Root | 24.697 |
| SRR9715742 | Root | 35.629 |
| SRR9715743 | Root | 36.293 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.682 |
| SRR8749028 | MeJA induced 9h | 6.398 |
| SRR8749029 | MeJA induced 9h | 1.742 |
| SRR8749030 | Uninduced | 1.234 |
| SRR8749031 | Uninduced | 1.685 |
| SRR8749032 | Uninduced | 0.675 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.121 |
| SRR8400027 | Control-Root | 3.093 |