Gene detail information of Glyur000004s00000499.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G55440.18.00E-111triosephosphate isomerase
NRABA86966.14.32E-174triosephosphate isomerase [Glycine max]
COGYP_001995455.11.00E-67triosephosphate isomerase [Chloroherpeton thalassium ATCC 35110]
Swissprottr|P48495|TPIS_PETHY2.00E-153Triosephosphate isomerase, cytosolic
trEMBLtr|Q38IW8|Q38IW8_SOYBN2.00E-174Triosephosphate isomerase {ECO:0000256|RuleBase:RU000517}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00004726213729595-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01803TPI, tpiA EC:5.3.1.1 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Glycolysis / Gluconeogenesismap00010
Fructose and mannose metabolismmap00051
Inositol phosphate metabolismmap00562
Carbon fixation in photosynthetic organismsmap00710


Gene Ontology

biological_process

GO:0006096  glycolytic process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004807  triose-phosphate isomerase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000004s00000499.1PF00121.13TIM62451.70E-88


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control653.254
SRR1783600control654.901
SRR1783602moderate drought stress386.138
SRR1811619moderate drought stress384.747

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain560.587
DRR006520Root Summer glycyrrhizin high producing strain554.102
DRR006521Root Winter glycyrrhizin high producing strain369.648
DRR006522Root Winter glycyrrhizin high producing strain358.413
DRR006523Root Summer glycyrrhizin low producing strain408.143
DRR006524Root Summer glycyrrhizin low producing strain407.925
DRR006525Leaf Summer glycyrrhizin high producing strain430.589
DRR006526Leaf Summer glycyrrhizin high producing strain429.906

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)950.467
SRR2868004Drought Stress(Tissue:root)594.738
SRR2967015Control (Tissue:root)546.069

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave676.531
SRR9715740Leave674.765
SRR9715741Leave642.241
SRR9715739Root384.822
SRR9715742Root507.887
SRR9715743Root490.917

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h595.621
SRR8749028MeJA induced 9h638.178
SRR8749029MeJA induced 9h599.140
SRR8749030Uninduced584.903
SRR8749031Uninduced436.222
SRR8749032Uninduced576.450

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1039.484
SRR8400027Control-Root1158.435

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved