Gene detail information of Glyur000004s00000504.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G45910.16.00E-132U-box domain-containing protein kinase family protein
NRKEH39428.10U-box kinase family protein [Medicago truncatula]
COGYP_645024.15.00E-22serine/threonine protein kinase [Rubrobacter xylanophilus DSM 9941]
Swissprottr|Q8GUH1|PUB33_ARATH9.00E-155Serine/threonine-protein kinase
trEMBLtr|A0A072VDC6|A0A072VDC6_MEDTR0U-box kinase family protein {ECO:0000313|EMBL:KEH39428.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00004752779757394-


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:1.14.2
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006468  protein phosphorylation

GO:0016567  protein ubiquitination


molecular_function

GO:0004672  protein kinase activity

GO:0004842  ubiquitin-protein transferase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000004s00000504.1PF07714.12Pkinase_Tyr4416932.70E-35
Glyur000004s00000504.1PF04564.10U-box7117803.40E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.347
SRR1783600control18.534
SRR1783602moderate drought stress10.799
SRR1811619moderate drought stress10.867

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain18.094
DRR006520Root Summer glycyrrhizin high producing strain17.950
DRR006521Root Winter glycyrrhizin high producing strain4.486
DRR006522Root Winter glycyrrhizin high producing strain4.397
DRR006523Root Summer glycyrrhizin low producing strain54.144
DRR006524Root Summer glycyrrhizin low producing strain54.476
DRR006525Leaf Summer glycyrrhizin high producing strain13.249
DRR006526Leaf Summer glycyrrhizin high producing strain13.169

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)25.051
SRR2868004Drought Stress(Tissue:root)20.874
SRR2967015Control (Tissue:root)21.845

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave27.302
SRR9715740Leave19.780
SRR9715741Leave26.886
SRR9715739Root8.720
SRR9715742Root57.988
SRR9715743Root49.313

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h35.911
SRR8749028MeJA induced 9h46.734
SRR8749029MeJA induced 9h42.014
SRR8749030Uninduced52.437
SRR8749031Uninduced41.221
SRR8749032Uninduced37.921

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.868
SRR8400027Control-Root33.994

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved