Gene detail information of Glyur000004s00000508.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G28840.1 | 3.00E-171 | XB3 ortholog 1 in Arabidopsis thaliana |
| NR | XP_003543511.1 | 0 | PREDICTED: putative E3 ubiquitin-protein ligase XBAT31-like [Glycine max] |
| COG | YP_006705297.1 | 1.00E-19 | Ankyrin 2,3/unc44 [Cardinium endosymbiont cEper1 of Encarsia pergandiella] |
| Swissprot | tr|Q94B55|XB31_ARATH | 0 | Putative E3 ubiquitin-protein ligase XBAT31 |
| trEMBL | tr|I1M4W0|I1M4W0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G41040.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00004 | 779491 | 783448 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000004s00000508.1 | PF00023.25 | Ank | 47 | 76 | 0.00015 |
| Glyur000004s00000508.1 | PF12796.2 | Ank_2 | 83 | 185 | 3.30E-20 |
| Glyur000004s00000508.1 | PF00023.25 | Ank | 195 | 225 | 1.60E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 34.627 |
| SRR1783600 | control | 34.723 |
| SRR1783602 | moderate drought stress | 29.771 |
| SRR1811619 | moderate drought stress | 29.424 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 90.954 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 89.843 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 514.648 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 503.679 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 142.458 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 143.360 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.539 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.999 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 17.774 |
| SRR2868004 | Drought Stress(Tissue:root) | 12.401 |
| SRR2967015 | Control (Tissue:root) | 23.692 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 21.097 |
| SRR9715740 | Leave | 13.673 |
| SRR9715741 | Leave | 18.791 |
| SRR9715739 | Root | 16.000 |
| SRR9715742 | Root | 37.204 |
| SRR9715743 | Root | 36.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 28.122 |
| SRR8749028 | MeJA induced 9h | 36.151 |
| SRR8749029 | MeJA induced 9h | 28.603 |
| SRR8749030 | Uninduced | 41.810 |
| SRR8749031 | Uninduced | 22.829 |
| SRR8749032 | Uninduced | 18.537 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.330 |
| SRR8400027 | Control-Root | 26.700 |