Gene detail information of Glyur000004s00000513.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G59300.19.00E-64ubiquitin carrier protein 7
NRNP_001237055.17.38E-118uncharacterized protein LOC100305813 [Glycine max]
COGYP_008797956.15.00E-12ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
Swissprottr|Q42540|UBC7_ARATH2.00E-105Ubiquitin-conjugating enzyme E2 7
trEMBLtr|C6SWR4|C6SWR4_SOYBN3.00E-118Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G14980.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00004813201816488+


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10575UBE2G1, UBC7 EC:2.3.2.23 Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120
Parkinson's diseasemap05012


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000004s00000513.1PF00179.21UQ_con532021.50E-52


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control46.383
SRR1783600control47.146
SRR1783602moderate drought stress36.590
SRR1811619moderate drought stress36.549

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain55.950
DRR006520Root Summer glycyrrhizin high producing strain55.679
DRR006521Root Winter glycyrrhizin high producing strain109.918
DRR006522Root Winter glycyrrhizin high producing strain106.178
DRR006523Root Summer glycyrrhizin low producing strain60.065
DRR006524Root Summer glycyrrhizin low producing strain60.297
DRR006525Leaf Summer glycyrrhizin high producing strain13.947
DRR006526Leaf Summer glycyrrhizin high producing strain14.027

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)46.015
SRR2868004Drought Stress(Tissue:root)47.601
SRR2967015Control (Tissue:root)42.186

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave27.377
SRR9715740Leave27.008
SRR9715741Leave30.095
SRR9715739Root43.520
SRR9715742Root46.808
SRR9715743Root43.940

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h72.485
SRR8749028MeJA induced 9h131.861
SRR8749029MeJA induced 9h97.423
SRR8749030Uninduced149.263
SRR8749031Uninduced96.505
SRR8749032Uninduced92.079

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root46.696
SRR8400027Control-Root50.930