Gene detail information of Glyur000004s00000513.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT5G59300.1 | 9.00E-64 | ubiquitin carrier protein 7 |
NR | NP_001237055.1 | 7.38E-118 | uncharacterized protein LOC100305813 [Glycine max] |
COG | YP_008797956.1 | 5.00E-12 | ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum] |
Swissprot | tr|Q42540|UBC7_ARATH | 2.00E-105 | Ubiquitin-conjugating enzyme E2 7 |
trEMBL | tr|C6SWR4|C6SWR4_SOYBN | 3.00E-118 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G14980.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00004 | 813201 | 816488 | + |
Gene family
Gene family | subfamily |
---|---|
Ubiquitin Family | UBC |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K10575 | UBE2G1, UBC7 | EC:2.3.2.23 | Protein processing in endoplasmic reticulum | map04141 |
Ubiquitin mediated proteolysis | map04120 | |||
Parkinson's disease | map05012 |
Gene OntologyNot hits found. |
Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000004s00000513.1 | PF00179.21 | UQ_con | 53 | 202 | 1.50E-52 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 46.383 |
SRR1783600 | control | 47.146 |
SRR1783602 | moderate drought stress | 36.590 |
SRR1811619 | moderate drought stress | 36.549 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 55.950 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 55.679 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 109.918 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 106.178 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 60.065 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 60.297 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.947 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.027 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 46.015 |
SRR2868004 | Drought Stress(Tissue:root) | 47.601 |
SRR2967015 | Control (Tissue:root) | 42.186 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 27.377 |
SRR9715740 | Leave | 27.008 |
SRR9715741 | Leave | 30.095 |
SRR9715739 | Root | 43.520 |
SRR9715742 | Root | 46.808 |
SRR9715743 | Root | 43.940 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 72.485 |
SRR8749028 | MeJA induced 9h | 131.861 |
SRR8749029 | MeJA induced 9h | 97.423 |
SRR8749030 | Uninduced | 149.263 |
SRR8749031 | Uninduced | 96.505 |
SRR8749032 | Uninduced | 92.079 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 46.696 |
SRR8400027 | Control-Root | 50.930 |