Gene detail information of Glyur000005s00000998.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G06650.10ATP-citrate lyase B-1
NRXP_007147365.10hypothetical protein PHAVU_006G118100g [Phaseolus vulgaris]
COGYP_004151629.10ATP-citrate lyase/succinyl-CoA ligase [Thermovibrio ammonificans HB-1]
Swissprottr|Q93VT8|ACLB1_ORYSJ0ATP-citrate synthase beta chain protein 1
trEMBLtr|V7BMZ5|V7BMZ5_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW19359.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00005528420818+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01648ACLY EC:2.3.3.8 Citrate cycle (TCA cycle) map00020
Carbon fixation pathways in prokaryotesmap00720


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0044262  cellular carbohydrate metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0046912  transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000005s00000998.1PF00285.16Citrate_synt2784241.50E-10
Glyur000005s00000998.1PF00285.16Citrate_synt7909892.60E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control88.505
SRR1783600control89.551
SRR1783602moderate drought stress40.282
SRR1811619moderate drought stress40.512

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain62.962
DRR006520Root Summer glycyrrhizin high producing strain62.625
DRR006521Root Winter glycyrrhizin high producing strain48.358
DRR006522Root Winter glycyrrhizin high producing strain47.428
DRR006523Root Summer glycyrrhizin low producing strain24.671
DRR006524Root Summer glycyrrhizin low producing strain24.491
DRR006525Leaf Summer glycyrrhizin high producing strain43.529
DRR006526Leaf Summer glycyrrhizin high producing strain42.595

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)213.275
SRR2868004Drought Stress(Tissue:root)136.718
SRR2967015Control (Tissue:root)134.260

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave67.003
SRR9715740Leave27.567
SRR9715741Leave54.101
SRR9715739Root50.962
SRR9715742Root95.825
SRR9715743Root90.424

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h38.171
SRR8749028MeJA induced 9h32.655
SRR8749029MeJA induced 9h23.101
SRR8749030Uninduced203.053
SRR8749031Uninduced216.928
SRR8749032Uninduced88.966

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root178.966
SRR8400027Control-Root166.340

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved