Gene detail information of Glyur000005s00001037.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G06560.11.00E-155poly(A) polymerase 3
NRXP_004503248.10PREDICTED: poly(A) polymerase-like [Cicer arietinum]
COGYP_005369064.15.00E-37polynucleotide Adenyltransferase [Corallococcus coralloides DSM 2259]
Swissprottr|Q56XM9|PAPS3_ARATH0Nuclear poly(A) polymerase 3 {ECO:0000303|PubMed:18479511}
trEMBLtr|V7BQQ2|V7BQQ2_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW19380.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00005195794200800-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14376PAP EC:2.7.7.19 mRNA surveillance pathway map03015


Gene Ontology

biological_process

GO:0031123  RNA 3'-end processing

GO:0043631  RNA polyadenylation


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003723  RNA binding

GO:0004652  polynucleotide adenylyltransferase activity

GO:0016779  nucleotidyltransferase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000005s00001037.1PF04928.12PAP_central683913.50E-70
Glyur000005s00001037.1PF04926.10PAP_RNA-bind3954946.50E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.186
SRR1783600control3.144
SRR1783602moderate drought stress4.039
SRR1811619moderate drought stress4.200

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.239
DRR006520Root Summer glycyrrhizin high producing strain8.075
DRR006521Root Winter glycyrrhizin high producing strain13.504
DRR006522Root Winter glycyrrhizin high producing strain13.297
DRR006523Root Summer glycyrrhizin low producing strain8.644
DRR006524Root Summer glycyrrhizin low producing strain8.557
DRR006525Leaf Summer glycyrrhizin high producing strain4.688
DRR006526Leaf Summer glycyrrhizin high producing strain4.591

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)3.818
SRR2868004Drought Stress(Tissue:root)5.304
SRR2967015Control (Tissue:root)4.915

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.973
SRR9715740Leave6.735
SRR9715741Leave10.020
SRR9715739Root2.435
SRR9715742Root4.748
SRR9715743Root3.944

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.675
SRR8749028MeJA induced 9h14.252
SRR8749029MeJA induced 9h5.695
SRR8749030Uninduced6.992
SRR8749031Uninduced11.945
SRR8749032Uninduced9.411

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.914
SRR8400027Control-Root6.639

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved