Gene detail information of Glyur000005s00001050.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G49620.1 | 2.00E-67 | myb domain protein 78 |
| NR | XP_004486524.1 | 1.04E-151 | PREDICTED: myb-related protein 330-like [Cicer arietinum] |
| Swissprot | tr|Q9LDE1|MY108_ARATH | 1.00E-85 | Transcription factor MYB108 |
| trEMBL | tr|V7BQR2|V7BQR2_PHAVU | 8.00E-144 | Uncharacterized protein {ECO:0000313|EMBL:ESW19390.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00005 | 288208 | 290223 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000005s00001050.1 | PF00249.26 | Myb_DNA-binding | 22 | 69 | 1.30E-14 |
| Glyur000005s00001050.1 | PF00249.26 | Myb_DNA-binding | 75 | 118 | 5.70E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.042 |
| SRR1783600 | control | 3.105 |
| SRR1783602 | moderate drought stress | 1.911 |
| SRR1811619 | moderate drought stress | 1.909 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.478 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.478 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 21.039 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 21.352 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.226 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.362 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.628 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.536 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.071 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.913 |
| SRR2967015 | Control (Tissue:root) | 8.661 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.297 |
| SRR9715740 | Leave | 3.920 |
| SRR9715741 | Leave | 19.791 |
| SRR9715739 | Root | 3.562 |
| SRR9715742 | Root | 11.548 |
| SRR9715743 | Root | 8.726 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 259.219 |
| SRR8749028 | MeJA induced 9h | 130.098 |
| SRR8749029 | MeJA induced 9h | 33.374 |
| SRR8749030 | Uninduced | 39.521 |
| SRR8749031 | Uninduced | 10.788 |
| SRR8749032 | Uninduced | 24.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.208 |
| SRR8400027 | Control-Root | 3.501 |