Gene detail information of Glyur000005s00001054.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G17205.30ubiquitin protein ligase 6
NRXP_003546300.10PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Glycine max]
Swissprottr|Q8RWB8|UPL6_ARATH0E3 ubiquitin-protein ligase UPL6
trEMBLtr|K7MB82|K7MB82_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G14591.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00005322814341082+


Gene family

Gene familysubfamily
Ubiquitin FamilyHECT


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10589UBE3C EC:2.3.2.26 Ubiquitin mediated proteolysis map04120


Gene Ontology

molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000005s00001054.1PF00632.20HECT7788618.20E-16
Glyur000005s00001054.1PF00632.20HECT8959363.70E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.526
SRR1783600control17.669
SRR1783602moderate drought stress15.689
SRR1811619moderate drought stress14.739

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.834
DRR006520Root Summer glycyrrhizin high producing strain20.901
DRR006521Root Winter glycyrrhizin high producing strain19.973
DRR006522Root Winter glycyrrhizin high producing strain19.708
DRR006523Root Summer glycyrrhizin low producing strain19.203
DRR006524Root Summer glycyrrhizin low producing strain20.745
DRR006525Leaf Summer glycyrrhizin high producing strain13.043
DRR006526Leaf Summer glycyrrhizin high producing strain12.699

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)33.547
SRR2868004Drought Stress(Tissue:root)38.163
SRR2967015Control (Tissue:root)36.857

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.018
SRR9715740Leave17.043
SRR9715741Leave22.118
SRR9715739Root3.789
SRR9715742Root18.659
SRR9715743Root17.487

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h24.910
SRR8749028MeJA induced 9h43.753
SRR8749029MeJA induced 9h20.974
SRR8749030Uninduced11.658
SRR8749031Uninduced16.010
SRR8749032Uninduced9.824

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root38.432
SRR8400027Control-Root39.981

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved