Gene detail information of Glyur000005s00001064.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G48100.1 | 4.00E-175 | Pectin lyase-like superfamily protein |
| NR | XP_004486518.1 | 0 | PREDICTED: polygalacturonase At1g48100-like [Cicer arietinum] |
| COG | YP_001179193.1 | 4.00E-26 | galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903] |
| Swissprot | tr|Q949Z1|PGLR4_ARATH | 0 | Polygalacturonase At1g48100 (Precursor) |
| trEMBL | tr|V7BQR7|V7BQR7_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW19395.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00005 | 382309 | 385642 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000005s00001064.1 | PF00295.12 | Glyco_hydro_28 | 114 | 410 | 9.10E-75 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 73.773 |
| SRR1783600 | control | 73.935 |
| SRR1783602 | moderate drought stress | 54.316 |
| SRR1811619 | moderate drought stress | 53.811 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 44.794 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 43.728 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.069 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.124 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 40.758 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 40.582 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.442 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.350 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 41.643 |
| SRR2868004 | Drought Stress(Tissue:root) | 25.659 |
| SRR2967015 | Control (Tissue:root) | 9.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.503 |
| SRR9715740 | Leave | 0.232 |
| SRR9715741 | Leave | 0.623 |
| SRR9715739 | Root | 35.058 |
| SRR9715742 | Root | 40.485 |
| SRR9715743 | Root | 39.487 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.081 |
| SRR8749028 | MeJA induced 9h | 0.065 |
| SRR8749029 | MeJA induced 9h | 0.112 |
| SRR8749030 | Uninduced | 0.109 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 249.126 |
| SRR8400027 | Control-Root | 158.735 |