Gene detail information of Glyur000005s00001070.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G06480.10DEAD box RNA helicase family protein
NRXP_004486514.10PREDICTED: DEAD-box ATP-dependent RNA helicase 40-like [Cicer arietinum]
COGYP_004671991.19.00E-93ATP-dependent RNA helicase DBP2 [Simkania negevensis Z]
Swissprottr|Q9SQV1|RH40_ARATH0DEAD-box ATP-dependent RNA helicase 40
trEMBLtr|K7LBJ6|K7LBJ6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G03560.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00005412356420244-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12823DDX5, DBP2 EC:3.6.4.13 Spliceosome map03040
Transcriptional misregulation in cancersmap05202
Proteoglycans in cancermap05205


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0005515  protein binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000005s00001070.1PF00397.21WW961261.10E-06
Glyur000005s00001070.1PF00270.24DEAD5977679.20E-45
Glyur000005s00001070.1PF00271.26Helicase_C8439122.90E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control19.343
SRR1783600control19.609
SRR1783602moderate drought stress20.221
SRR1811619moderate drought stress20.203

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.177
DRR006520Root Summer glycyrrhizin high producing strain16.865
DRR006521Root Winter glycyrrhizin high producing strain33.224
DRR006522Root Winter glycyrrhizin high producing strain32.926
DRR006523Root Summer glycyrrhizin low producing strain17.329
DRR006524Root Summer glycyrrhizin low producing strain17.447
DRR006525Leaf Summer glycyrrhizin high producing strain13.341
DRR006526Leaf Summer glycyrrhizin high producing strain13.153

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)32.945
SRR2868004Drought Stress(Tissue:root)32.934
SRR2967015Control (Tissue:root)33.714

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.705
SRR9715740Leave20.025
SRR9715741Leave18.706
SRR9715739Root10.518
SRR9715742Root30.328
SRR9715743Root28.113

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h18.160
SRR8749028MeJA induced 9h55.514
SRR8749029MeJA induced 9h20.925
SRR8749030Uninduced13.333
SRR8749031Uninduced24.812
SRR8749032Uninduced16.898

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root34.758
SRR8400027Control-Root31.160

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved