Gene detail information of Glyur000005s00001074.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G44520.1 | 2.00E-57 | NagB/RpiA/CoA transferase-like superfamily protein |
| NR | XP_004486512.1 | 1.13E-115 | PREDICTED: probable ribose-5-phosphate isomerase-like [Cicer arietinum] |
| COG | YP_006982862.1 | 1.00E-15 | ribose 5-phosphate isomerase [Gluconobacter oxydans H24] |
| Swissprot | tr|Q9FI13|RPI4_ARATH | 2.00E-71 | Probable ribose-5-phosphate isomerase 4, chloroplastic (Precursor) |
| trEMBL | tr|V7BS57|V7BS57_PHAVU | 3.00E-113 | Uncharacterized protein {ECO:0000313|EMBL:ESW19406.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00005 | 433362 | 436963 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01807 | rpiA | EC:5.3.1.6 | Carbon metabolism | map01200 |
| Biosynthesis of amino acids | map01230 | |||
| Pentose phosphate pathway | map00030 | |||
| Carbon fixation in photosynthetic organisms | map00710 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.414 |
| SRR1783600 | control | 1.421 |
| SRR1783602 | moderate drought stress | 1.170 |
| SRR1811619 | moderate drought stress | 1.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.147 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.317 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.844 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.944 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.498 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.637 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.408 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.268 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.402 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.905 |
| SRR2967015 | Control (Tissue:root) | 1.571 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.796 |
| SRR9715740 | Leave | 14.080 |
| SRR9715741 | Leave | 6.797 |
| SRR9715739 | Root | 0.446 |
| SRR9715742 | Root | 0.976 |
| SRR9715743 | Root | 1.001 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.620 |
| SRR8749028 | MeJA induced 9h | 6.748 |
| SRR8749029 | MeJA induced 9h | 4.035 |
| SRR8749030 | Uninduced | 1.360 |
| SRR8749031 | Uninduced | 0.411 |
| SRR8749032 | Uninduced | 2.436 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.040 |
| SRR8400027 | Control-Root | 3.980 |