Gene detail information of Glyur000005s00001074.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G44520.12.00E-57NagB/RpiA/CoA transferase-like superfamily protein
NRXP_004486512.11.13E-115PREDICTED: probable ribose-5-phosphate isomerase-like [Cicer arietinum]
COGYP_006982862.11.00E-15ribose 5-phosphate isomerase [Gluconobacter oxydans H24]
Swissprottr|Q9FI13|RPI4_ARATH2.00E-71Probable ribose-5-phosphate isomerase 4, chloroplastic (Precursor)
trEMBLtr|V7BS57|V7BS57_PHAVU3.00E-113Uncharacterized protein {ECO:0000313|EMBL:ESW19406.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00005433362436963+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01807rpiA EC:5.3.1.6 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Pentose phosphate pathwaymap00030
Carbon fixation in photosynthetic organismsmap00710


Gene Ontology

biological_process

GO:0009052  pentose-phosphate shunt, non-oxidative branch


molecular_function

GO:0004751  ribose-5-phosphate isomerase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
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Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.414
SRR1783600control1.421
SRR1783602moderate drought stress1.170
SRR1811619moderate drought stress1.239

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.147
DRR006520Root Summer glycyrrhizin high producing strain3.317
DRR006521Root Winter glycyrrhizin high producing strain0.844
DRR006522Root Winter glycyrrhizin high producing strain0.944
DRR006523Root Summer glycyrrhizin low producing strain3.498
DRR006524Root Summer glycyrrhizin low producing strain3.637
DRR006525Leaf Summer glycyrrhizin high producing strain8.408
DRR006526Leaf Summer glycyrrhizin high producing strain8.268

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.402
SRR2868004Drought Stress(Tissue:root)1.905
SRR2967015Control (Tissue:root)1.571

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.796
SRR9715740Leave14.080
SRR9715741Leave6.797
SRR9715739Root0.446
SRR9715742Root0.976
SRR9715743Root1.001

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.620
SRR8749028MeJA induced 9h6.748
SRR8749029MeJA induced 9h4.035
SRR8749030Uninduced1.360
SRR8749031Uninduced0.411
SRR8749032Uninduced2.436

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root4.040
SRR8400027Control-Root3.980

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved