Gene detail information of Glyur000005s00001078.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G30620.20NAD(P)-binding Rossmann-fold superfamily protein
NRXP_003533104.10PREDICTED: UDP-arabinose 4-epimerase 1-like [Glycine max]
COGYP_005445125.12.00E-96UDP-glucose 4-epimerase [Phycisphaera mikurensis NBRC 102666]
Swissprottr|Q9SA77|ARAE1_ARATH0UDP-arabinose 4-epimerase 1
trEMBLtr|I1L0L0|I1L0L0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G03490.6}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00005444153449211-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12448UXE, uxe EC:5.1.3.5 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

biological_process

GO:0006012  galactose metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0003978  UDP-glucose 4-epimerase activity

GO:0050662  coenzyme binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000005s00001078.2PF01370.16Epimerase11091.30E-10
Glyur000005s00001078.2PF13950.1Epimerase_Csub1221845.50E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control24.740
SRR1783600control24.434
SRR1783602moderate drought stress27.995
SRR1811619moderate drought stress27.406

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain54.618
DRR006520Root Summer glycyrrhizin high producing strain53.878
DRR006521Root Winter glycyrrhizin high producing strain44.302
DRR006522Root Winter glycyrrhizin high producing strain43.102
DRR006523Root Summer glycyrrhizin low producing strain48.359
DRR006524Root Summer glycyrrhizin low producing strain47.746
DRR006525Leaf Summer glycyrrhizin high producing strain14.922
DRR006526Leaf Summer glycyrrhizin high producing strain14.864

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)73.071
SRR2868004Drought Stress(Tissue:root)70.400
SRR2967015Control (Tissue:root)59.935

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave36.786
SRR9715740Leave36.815
SRR9715741Leave37.835
SRR9715739Root17.528
SRR9715742Root44.214
SRR9715743Root38.906

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h187.082
SRR8749028MeJA induced 9h218.059
SRR8749029MeJA induced 9h217.538
SRR8749030Uninduced190.921
SRR8749031Uninduced78.924
SRR8749032Uninduced86.465

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root81.567
SRR8400027Control-Root74.056

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved