Gene detail information of Glyur000005s00001090.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G49950.35.00E-82telomere repeat binding factor 1
NRAHB59609.14.12E-145putative MYB-related protein 23 [Arachis hypogaea]
Swissprottr|Q8VWK4|TRB1_ARATH4.00E-102Telomere repeat-binding factor 1
trEMBLtr|V5T6Q3|V5T6Q3_ARAHY2.00E-145Putative MYB-related protein 23 {ECO:0000313|EMBL:AHB59609.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00005528924533870-


Gene family

Gene familysubfamily
Transcription Factors FamilyMYB-related


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006334  nucleosome assembly


cellular_component

GO:0000786  nucleosome

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0003682  chromatin binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000005s00001090.1PF00249.26Myb_DNA-binding641151.10E-08
Glyur000005s00001090.1PF00538.14Linker_histone1842392.90E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.917
SRR1783600control15.261
SRR1783602moderate drought stress17.109
SRR1811619moderate drought stress16.672

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain23.214
DRR006520Root Summer glycyrrhizin high producing strain22.213
DRR006521Root Winter glycyrrhizin high producing strain21.338
DRR006522Root Winter glycyrrhizin high producing strain20.212
DRR006523Root Summer glycyrrhizin low producing strain26.293
DRR006524Root Summer glycyrrhizin low producing strain27.444
DRR006525Leaf Summer glycyrrhizin high producing strain20.595
DRR006526Leaf Summer glycyrrhizin high producing strain20.103

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)33.163
SRR2868004Drought Stress(Tissue:root)40.542
SRR2967015Control (Tissue:root)38.907

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave32.642
SRR9715740Leave31.838
SRR9715741Leave37.547
SRR9715739Root7.762
SRR9715742Root17.137
SRR9715743Root15.769

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h28.002
SRR8749028MeJA induced 9h27.835
SRR8749029MeJA induced 9h24.911
SRR8749030Uninduced36.439
SRR8749031Uninduced33.875
SRR8749032Uninduced40.634

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root37.033
SRR8400027Control-Root35.885

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved