Gene detail

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Gene detail information of Glyur000005s00001095.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G37930.1	6.00E-27	Protein with RING/U-box and TRAF-like domains
NR	KHN39162.1	1.26E-40	E3 ubiquitin-protein ligase SINA-like 10 [Glycine soja]
Swissprot	tr\|Q84K34\|SIL10_ARATH	2.00E-30	E3 ubiquitin-protein ligase SINA-like 10
trEMBL	tr\|I1KRA5\|I1KRA5_SOYBN	7.00E-41	E3 ubiquitin-protein ligase {ECO:0000256\|RuleBase:RU201113}

Sequence

Transcript Sequence

>Glyur000005s00001095.1
ATGAAAAGAAATGCACCTATGTACCATGCATGTCACTGCCCGGTTTCAGGTTGTGANTTTGTTGCCCCATACAAGGAGTTATCCAACCACCTCAGCAGCCAGAAACATGGGGATTCTCGAATCCAATTTTCATATGGTCACTCTTTCCAAGTGTCCCTGGAGCCTGGTGATTATGGTGCTGAAACATCGGATGAAGAAAGTGATAGTGAAGAAGTAGAGGAGGAGCAAGATCAGGAGGAGGAGAGTGATAGTGAAGAAGTAGAAGAGGAGCAAGAGGAGGAGGATATCGATGAAGGAAGGGCGGAAAATGAAGAAGATGTTGATTATGAAGAGGATTCGAACAGTGACCATGGTGAAACTAACAATCTCATGGCCATCGAGAATGACTCTAATAGGCCCTCCANCCCCCCACTACATGCACCAATCCTCCCGTTTTCCAGCCGCACAGTTAAGAGGAAGTGTTCCATGTGCTCCTGTCCCATTGCCCATACTCGTTGTCGTGCTATAGAGAGTGTTCTGGAATCTATGAAGATAGCATGCAAAAATGCAAAATATGGTTGCAAAGAGCTGGTAAAGTATGGCGAGAAACATACACATGAGAAGACATGTGTCTTTCAAAGATGTTTCTGCCCCCAAATAGGTTGCGACCATGTTAACAATTACAGGGATTTAACCTTTCACTTCAGGATGACTCATATGCTTGCTGANCCACCATTTACATATGATGAAGTTTTTGATACCGAGTTACGGTGTGAGGAGGACACCGTCGTTTTNCAAGCNTTAACTGATGGCATATTGTTTGTTATCAAAAACCAAATCGGGCGTCATTNGAACACTGTTACTCTTTGTCACATTGGGCCTAGTTCGTTGAACCTAGAATTTCCTTTTGAATTGTATGTTATGCCTCAACAAGGAAGANGAAATCCTCGTTTGTTTCGATCGAAAGCTAAGAACGTTCAAGACCACAAATCTGGTTCACCATCGTCATGTTTCCTTGTGGTTCCTTCTGANTTTTTCCAACCTTCTGGTCGGCTTGCGTTGAAAATACGCATACACAAAAAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00005	552098	558304	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04506	SIAH1	EC:2.3.2.27	Ubiquitin mediated proteolysis	map04120
			MAPK signaling pathway - fly	map04013
			Wnt signaling pathway	map04310
			p53 signaling pathway	map04115

Gene Ontology

biological_process

GO:0006511 ubiquitin-dependent protein catabolic process

GO:0007275 multicellular organism development

GO:0016567 protein ubiquitination

cellular_component GO:0005634 nucleus molecular_function GO:0004842 ubiquitin-protein transferase activity GO:0005515 protein binding GO:0008270 zinc ion binding "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000005s00001095.1	PF03145.11	Sina	165	349	7.40E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.198
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.006
SRR2868004	Drought Stress(Tissue:root)	0.000
SRR2967015	Control (Tissue:root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.000
SRR9715740	Leave	0.000
SRR9715741	Leave	0.012
SRR9715739	Root	0.000
SRR9715742	Root	0.008
SRR9715743	Root	0.115

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.165
SRR8749028	MeJA induced 9h	0.067
SRR8749029	MeJA induced 9h	0.121
SRR8749030	Uninduced	0.055
SRR8749031	Uninduced	0.026
SRR8749032	Uninduced	0.144

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.004
SRR8400027	Control-Root	0.000