Gene detail

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Gene detail information of Glyur000005s00001103.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G30700.1	1.00E-80	FAD-binding Berberine family protein
NR	KEH37088.1	0	FAD-binding berberine family protein [Medicago truncatula]
COG	YP_001252809.1	7.00E-21	FAD-dependent oxidoreductase [Clostridium botulinum A str. ATCC 3502]
Swissprot	tr\|Q9SVG4\|RETOL_ARATH	6.00E-78	Reticuline oxidase-like protein (Precursor)
trEMBL	tr\|A0A072V6U6\|A0A072V6U6_MEDTR	0	FAD-binding berberine family protein {ECO:0000313\|EMBL:KEH37088.1}

Sequence

Transcript Sequence

>Glyur000005s00001103.1
ATGGGACTCCTTTCTCTTAATAGATCAATACAATTATCATCATTATTATTTCCCATTGCTGTGTTACTTTCTCTATCATGGTACTCAGCTTCAGCTGCAAATTCAACTAACAACACTTTTCTCCATTGCCTCGTGAACCATTCAGATCCCTCCCACCCCATAACTTCAGCAATTTTCACACCAAACAATTCCTCATTCCCTTCAGTGTTACAAGCCTACATCAGAAACCTTCGTTTCAACACCACCACAACCCGAAAGCCATTCCTTATAATAACCGCATTGCATGTATCCCACATACAAGCAGCCATTATCTGTGGCCAAAATCACAACCTTCAGATGAAAATCAGAAGTGGGGGACATGACTATGAGGGTGTGTCCTACGTGGCAGAGGTTCCATTCTTCATCCTAGACATGTTCAATCTTCGATCCATCGAAATTGACATGGACACTGAAACAGCTTGGGTCCAATCTGGTGCAACACTTGGTGAACTTTACTATAGAATCGCTGAGAAGAGCAAACATCATGGTTTCCCAGCTGGGGTTTGTCCCACAGTTGGGGTGGGAGGACACATTAGTGGTGGTGGCTATGGAAACATGATGAGAAAATATGGTCTCTCAGTGGACAATGTCATTGATGCACAAATTGTTGATGCTAAAGCTCTATTCCTTGGTGACTCCAAAAGGCTTGTTTCTCTTTTGAATGAGAGCTTCCCTCAATTGGGTTTGAAGGAATCTGATTGCATTGAAACAAGCTGGCTTCAATCTGTTCTGTTTTGGGACAACAAAGACATTGCTACCCCAGTTGAGATTTTGCTTAATAGACAACCACAATCACTAAACTACTTGAAAAGAAAATCTGACTATGTAAAGGAACCAATTTCCAAAGAGGGTTTGGAAGGGATTTGGAAGAAGATGNTTGAGCTTGTGGATGCAAAGCTATACTTCAATCCTTATGGTGGAAGAATGGCTGAGATTCCATCAAGTGCAACACCTTTCCCTCATCGTGCTGGGAACTTGTGGAAGGTGCAATACCAAGCAAATTGGAATGAGGCAGGGGAAGAGGTTGCTGATCACTACATAGGTTTGACAAGGGAACTTAGAAAATACATGACCCCTTTTGTCTCCAAGAACCCAAGGGGTGCTTTCTTGAATTACAAGGACCTTGATTTGGGGATTAACCACAANGGTAAAAACAGTTACTTTGAAGGGAGGGTTTATGGAGTTGAATATTTCAAGGATAACTTTGATAGGTTGGTGAAAATAAAGACCAAGGTTGATCCTGGGAATTTCTTTAGGAATGAACAAAGCATCCCTACTCTGCCATACCGGAAGAGTTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00005	596361	597995	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	AA7

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function GO:0003824 catalytic activity GO:0008762 UDP-N-acetylmuramate dehydrogenase activity GO:0016491 oxidoreductase activity GO:0016614 oxidoreductase activity, acting on CH-OH group of donors GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000005s00001103.1	PF01565.18	FAD_binding_4	89	219	2.00E-23
Glyur000005s00001103.1	PF08031.7	BBE	381	438	6.10E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.335
SRR1783600	control	0.370
SRR1783602	moderate drought stress	0.365
SRR1811619	moderate drought stress	0.399

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.007
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.069
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.069

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	16.353
SRR2868004	Drought Stress(Tissue:root)	79.961
SRR2967015	Control (Tissue:root)	32.903

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.027
SRR9715740	Leave	0.035
SRR9715741	Leave	0.023
SRR9715739	Root	0.000
SRR9715742	Root	0.732
SRR9715743	Root	0.637

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.291
SRR8749028	MeJA induced 9h	45.565
SRR8749029	MeJA induced 9h	6.455
SRR8749030	Uninduced	574.407
SRR8749031	Uninduced	2102.643
SRR8749032	Uninduced	375.392

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	36.820
SRR8400027	Control-Root	47.866