Gene detail

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Gene detail information of Glyur000005s00001112.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G34790.1	0	FAD-binding Berberine family protein
NR	XP_003535119.1	0	PREDICTED: cannabidiolic acid synthase-like 1-like isoform 1 [Glycine max]
COG	YP_001252780.1	4.00E-36	FAD-binding protein [Clostridium botulinum A str. ATCC 3502]
Swissprot	tr\|A6P6W0\|CASL1_CANSA	4.00E-165	Cannabidiolic acid synthase-like 1 (Precursor)
trEMBL	tr\|I1L0H6\|I1L0H6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G03090.1}

Sequence

Transcript Sequence

>Glyur000005s00001112.1
ATGGTATCACCAAGTTCACACTTGGCAATCTTAATCCTCTTGATATCAGTTTCATTCACAGCTTCTTCAGCTTCAACAATTGAAGAAAGTTTTGTCCAATGTCTGAGCTTCTATTCAGACAAGGCAGCTCCATTTTATGCAACAATTTACACACCAAACAATGCTTCATTCACCAAAATCCTGAACTCTTCTGCACAGAACCTAAGGTATTTGGTGCCTTCAGCACCAAAACCTGAGTTCATATTCACACCCTTAACTGATTCCCATGTCCAAGTAGCTGTGATTTGCTCAAAGAAACTTGGTATTCACCTGAGAGTACGAAGTGGTGGCCANGACTATGAAGGGCTATCCTATGTTTCTGAAATTGAGACACCCTTCATAATCATTGATTTGGCCAAGCTTCGTGATATCAATGTTGATATAGAAGACAACANTGCTTGGATTCAAGCAGGTGCCACTATTGGTGAGGTCTATTACAGAATTTATGAGAAAAGTTCTGTTCATGGGTTCCCTGCAGGCCTTTGCACAAGCTTAGGTGTTGGTGGGCACATAACAGGAGGTGCATATGGGTCCATGATGAGAAAGTATGGCCTTGGAGCTGACAATGTCCTTGATGCACAAATAGTTGATGCCAATGGCAAAATCCTTGACAGAAAAGCCATGGGGGAAGACCTGTTTTGGGCAATTAGAGGTGGTGGTGGAGGAAGCTTTGGTATCCTTCTTNGGTGGAAGATAAAGCTGGTTCCTGTGCCAGAAACTGTGACAGTTTTCACTGTCACAAAGAGCCTAGAGCAAGATGCAACTAGGCTTGTCCATAGGTGGCAGGAAGTGGCACCTNATATTGATGAAGAACTCTTCATCAGGGTCATCATTCAACCAGCTACTGTTGGCAACACAACCAAGAGAACCATTACAACCTCTTACAATGCTCTCTTCCTTGGTGGGGCTGATAGACTCCTCCAAGTTATGAAGGAGAGCTTCCCTGAATTGGGTTTGACCAAAAAAGATTGCCTTGAAACTAGCTGGATCAAGTCTGTGCTCTATATTGCAGGTTTTCCAAATGACACACCTCCTGAGGTTCTTCTTNATGGGAAATCAACATTCAAGAACTACTTCAAAGCAAAGTCAGATTTTGTGAGGGAACCAATACCAGAAACTGGGCTTCAAGGACTATGGCAAAGGTTGCTGGAGGAAGATAGTCCCTTGATGATTTGGAACCCATATGGTGGAATGATGAGCAACTTTTCAGAATCTGATATCCCTTTCCCCCACAGGAATGGGACGCTTTACAAAATCCAGTACCTAACTCTTTGGCAAGATGGTGATAAGAATGCCTCAAAGCACATAGACTGGATGAGGAAGCTTTACAACTACATGACTCCTTATGTGTCAAAGTTCCCAAGGGAAGCATATGTGAACTACAGGGATCTGGATTTGGGAATGAACAAGAACAGCACAAGCTACATACAGGCAACTGCTTGGGGTAACATGTATTTCAAGGATAACTTCAACAGGTTGGTGAAGATAAAGACCAAAGTGGATCCTGAAAACGTGTTCAGGCATGAGCAGAGTATCCCACCACTTCCAGTTTCAACTATGCAGCTAAAAGACAAGAAATGCAAGAACTGGGAATGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00005	654751	656385	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	AA7

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function GO:0003824 catalytic activity GO:0008762 UDP-N-acetylmuramate dehydrogenase activity GO:0016491 oxidoreductase activity GO:0016614 oxidoreductase activity, acting on CH-OH group of donors GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000005s00001112.1	PF01565.18	FAD_binding_4	78	217	4.20E-25
Glyur000005s00001112.1	PF08031.7	BBE	470	526	2.70E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.385
SRR1783600	control	6.212
SRR1783602	moderate drought stress	3.604
SRR1811619	moderate drought stress	3.227

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.600
DRR006520	Root Summer glycyrrhizin high producing strain	27.563
DRR006521	Root Winter glycyrrhizin high producing strain	0.543
DRR006522	Root Winter glycyrrhizin high producing strain	0.394
DRR006523	Root Summer glycyrrhizin low producing strain	100.403
DRR006524	Root Summer glycyrrhizin low producing strain	99.225
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.222
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.047

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	44.541
SRR2868004	Drought Stress(Tissue:root)	95.666
SRR2967015	Control (Tissue:root)	79.588

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.656
SRR9715740	Leave	0.722
SRR9715741	Leave	0.617
SRR9715739	Root	1.967
SRR9715742	Root	42.942
SRR9715743	Root	32.563

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.533
SRR8749028	MeJA induced 9h	0.748
SRR8749029	MeJA induced 9h	0.652
SRR8749030	Uninduced	0.155
SRR8749031	Uninduced	0.286
SRR8749032	Uninduced	0.480

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	8.291
SRR8400027	Control-Root	14.774