Gene detail information of Glyur000005s00001127.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G63890.20histidinol dehydrogenase
NRAFK44698.10unknown [Lotus japonicus]
COGYP_004052200.12.00E-140histidinol dehydrogenase [Marivirga tractuosa DSM 4126]
Swissprottr|Q5NAY4|HISX_ORYSJ0Histidinol dehydrogenase, chloroplastic (Precursor)
trEMBLtr|I3SWQ6|I3SWQ6_LOTJA0Histidinol dehydrogenase, chloroplastic {ECO:0000256|PIRNR:PIRNR000099}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00005760854765845-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00013hisD EC:1.1.1.23 Biosynthesis of amino acids map01230
Histidine metabolismmap00340


Gene Ontology

biological_process

GO:0000105  histidine biosynthetic process

GO:0008152  metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004399  histidinol dehydrogenase activity

GO:0008270  zinc ion binding

GO:0016491  oxidoreductase activity

GO:0051287  NAD binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000005s00001127.1PF00815.15Histidinol_dh634826.10E-171


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control27.077
SRR1783600control26.972
SRR1783602moderate drought stress26.079
SRR1811619moderate drought stress25.912

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain26.116
DRR006520Root Summer glycyrrhizin high producing strain25.919
DRR006521Root Winter glycyrrhizin high producing strain12.311
DRR006522Root Winter glycyrrhizin high producing strain12.059
DRR006523Root Summer glycyrrhizin low producing strain28.982
DRR006524Root Summer glycyrrhizin low producing strain28.824
DRR006525Leaf Summer glycyrrhizin high producing strain26.953
DRR006526Leaf Summer glycyrrhizin high producing strain26.500

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)49.739
SRR2868004Drought Stress(Tissue:root)38.242
SRR2967015Control (Tissue:root)42.369

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave34.392
SRR9715740Leave36.874
SRR9715741Leave30.606
SRR9715739Root39.158
SRR9715742Root31.194
SRR9715743Root30.496

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h18.820
SRR8749028MeJA induced 9h17.107
SRR8749029MeJA induced 9h12.310
SRR8749030Uninduced7.703
SRR8749031Uninduced2.032
SRR8749032Uninduced6.093

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root54.477
SRR8400027Control-Root47.710

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved