Gene detail information of Glyur000006s00001607.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G06600.33.00E-32ubiquitin-specific protease 12
NRXP_004494297.11.59E-86PREDICTED: uncharacterized protein LOC101489602 [Cicer arietinum]
Swissprottr|Q9FPT1|UBP12_ARATH1.00E-36Ubiquitin carboxyl-terminal hydrolase 12
trEMBLtr|A0A072U3M4|A0A072U3M4_MEDTR2.00E-78MATH (Meprin and TRAF-C-like) domain protein {ECO:0000313|EMBL:KEH24319.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000068502324-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11838USP7, UBP15 EC:3.4.19.12 FoxO signaling pathway map04068
Viral carcinogenesismap05203
Herpes simplex infectionmap05168
Epstein-Barr virus infectionmap05169


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000006s00001607.1PF00917.21MATH181551.50E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.070
SRR1783600control2.187
SRR1783602moderate drought stress1.747
SRR1811619moderate drought stress1.585

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.405
DRR006520Root Summer glycyrrhizin high producing strain2.301
DRR006521Root Winter glycyrrhizin high producing strain0.284
DRR006522Root Winter glycyrrhizin high producing strain0.163
DRR006523Root Summer glycyrrhizin low producing strain0.588
DRR006524Root Summer glycyrrhizin low producing strain0.411
DRR006525Leaf Summer glycyrrhizin high producing strain0.341
DRR006526Leaf Summer glycyrrhizin high producing strain0.525

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.253
SRR2868004Drought Stress(Tissue:root)0.234
SRR2967015Control (Tissue:root)0.164

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.340
SRR9715740Leave1.616
SRR9715741Leave0.675
SRR9715739Root0.767
SRR9715742Root1.894
SRR9715743Root2.327

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.528
SRR8749028MeJA induced 9h0.406
SRR8749029MeJA induced 9h0.136
SRR8749030Uninduced0.055
SRR8749031Uninduced0.037
SRR8749032Uninduced0.041

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.664
SRR8400027Control-Root4.017

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved