Gene detail information of Glyur000006s00001615.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G58500.12.00E-165protein phosphatase 2A-4
NRKHG30742.10Serine/threonine-protein phosphatase PP2A-4 catalytic subunit -like protein [Gossypium arboreum]
COGYP_001541554.13.00E-37metallophosphoesterase [Caldivirga maquilingensis IC-167]
Swissprottr|Q06009|PP2A_MEDSA0Serine/threonine-protein phosphatase PP2A catalytic subunit
trEMBLtr|Q9MB04|Q9MB04_VICFA0Serine/threonine-protein phosphatase {ECO:0000256|RuleBase:RU004273}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000065470559997+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04382PPP2C EC:3.1.3.16 mRNA surveillance pathway map03015
MAPK signaling pathway - flymap04013
TGF-beta signaling pathwaymap04350
Hippo signaling pathwaymap04390
Hippo signaling pathway -flymap04391
Sphingolipid signaling pathwaymap04071
PI3K-Akt signaling pathwaymap04151
AMPK signaling pathwaymap04152
Autophagy - animalmap04140
Autophagy - yeastmap04138
Cell cycle - yeastmap04111
Meiosis - yeastmap04113
Oocyte meiosismap04114
Tight junctionmap04530
Adrenergic signaling in cardiomyocytesmap04261
Dopaminergic synapsemap04728
Long-term depressionmap04730
Hepatitis Cmap05160
Chagas disease (American trypanosomiasis)map05142


Gene Ontology

molecular_function

GO:0016787  hydrolase activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000006s00001615.1PF00149.23Metallophos1233154.10E-40


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control109.512
SRR1783600control110.507
SRR1783602moderate drought stress101.382
SRR1811619moderate drought stress100.370

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain131.248
DRR006520Root Summer glycyrrhizin high producing strain129.917
DRR006521Root Winter glycyrrhizin high producing strain81.790
DRR006522Root Winter glycyrrhizin high producing strain78.992
DRR006523Root Summer glycyrrhizin low producing strain166.967
DRR006524Root Summer glycyrrhizin low producing strain166.235
DRR006525Leaf Summer glycyrrhizin high producing strain20.732
DRR006526Leaf Summer glycyrrhizin high producing strain20.456

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)79.087
SRR2868004Drought Stress(Tissue:root)82.109
SRR2967015Control (Tissue:root)92.000

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave33.034
SRR9715740Leave33.545
SRR9715741Leave44.901
SRR9715739Root185.280
SRR9715742Root125.189
SRR9715743Root134.226

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h76.431
SRR8749028MeJA induced 9h51.998
SRR8749029MeJA induced 9h54.380
SRR8749030Uninduced42.280
SRR8749031Uninduced40.696
SRR8749032Uninduced53.916

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root98.679
SRR8400027Control-Root100.919

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved