Gene detail information of Glyur000006s00001623.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G15620.10nitrite reductase 1
NRXP_003607969.10Ferredoxin-nitrite reductase [Medicago truncatula]
COGYP_007118319.10assimilatory nitrite reductase (ferredoxin) precursor [Oscillatoria nigro-viridis PCC 7112]
Swissprottr|P38500|NIR_BETPN0Ferredoxin--nitrite reductase, chloroplastic (Precursor)
trEMBLtr|G7JL79|G7JL79_MEDTR0Ferredoxin-nitrite reductase {ECO:0000313|EMBL:AES90166.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00006108562112101+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00366nirA EC:1.7.7.1 Nitrogen metabolism map00910


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016491  oxidoreductase activity

GO:0020037  heme binding

GO:0051536  iron-sulfur cluster binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000006s00001623.1PF03460.12NIR_SIR_ferr1211879.30E-18
Glyur000006s00001623.1PF01077.17NIR_SIR1963532.50E-32
Glyur000006s00001623.1PF03460.12NIR_SIR_ferr3784418.10E-20
Glyur000006s00001623.1PF01077.17NIR_SIR4585787.80E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.265
SRR1783600control2.279
SRR1783602moderate drought stress33.297
SRR1811619moderate drought stress33.065

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain34.968
DRR006520Root Summer glycyrrhizin high producing strain33.977
DRR006521Root Winter glycyrrhizin high producing strain58.075
DRR006522Root Winter glycyrrhizin high producing strain56.944
DRR006523Root Summer glycyrrhizin low producing strain25.677
DRR006524Root Summer glycyrrhizin low producing strain25.586
DRR006525Leaf Summer glycyrrhizin high producing strain74.072
DRR006526Leaf Summer glycyrrhizin high producing strain74.002

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)102.527
SRR2868004Drought Stress(Tissue:root)58.602
SRR2967015Control (Tissue:root)83.378

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave113.334
SRR9715740Leave86.020
SRR9715741Leave61.691
SRR9715739Root26.502
SRR9715742Root36.031
SRR9715743Root33.654

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1133.570
SRR8749028MeJA induced 9h1611.985
SRR8749029MeJA induced 9h1121.354
SRR8749030Uninduced651.682
SRR8749031Uninduced873.359
SRR8749032Uninduced721.195

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.370
SRR8400027Control-Root13.504

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved