Gene detail information of Glyur000006s00001700.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G43710.10Plant stearoyl-acyl-carrier-protein desaturase family protein
NRXP_004505150.10PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Cicer arietinum]
COGYP_006369323.11.00E-29Fatty acid desaturase [Modestobacter marinus]
Swissprottr|Q42807|STAD_SOYBN0Acyl-[acyl-carrier-protein] desaturase, chloroplastic (Precursor)
trEMBLtr|S5U3F4|S5U3F4_9FABA0Acyl-[acyl-carrier-protein] desaturase {ECO:0000256|RuleBase:RU000582}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00006596798600578+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03921FAB2, SSI2, desA1 EC:1.14.19.2 1.14.19.11 1.14.19.26 Fatty acid metabolism map01212
Fatty acid biosynthesismap00061
Biosynthesis of unsaturated fatty acidsmap01040


Gene Ontology

biological_process

GO:0006631  fatty acid metabolic process

GO:0006633  fatty acid biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016491  oxidoreductase activity

GO:0045300  acyl-[acyl-carrier-protein] desaturase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000006s00001700.1PF03405.9FA_desaturase_2643911.10E-186


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control101.433
SRR1783600control102.035
SRR1783602moderate drought stress92.946
SRR1811619moderate drought stress92.834

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain103.379
DRR006520Root Summer glycyrrhizin high producing strain102.273
DRR006521Root Winter glycyrrhizin high producing strain48.115
DRR006522Root Winter glycyrrhizin high producing strain46.944
DRR006523Root Summer glycyrrhizin low producing strain97.333
DRR006524Root Summer glycyrrhizin low producing strain98.298
DRR006525Leaf Summer glycyrrhizin high producing strain62.274
DRR006526Leaf Summer glycyrrhizin high producing strain62.129

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)105.619
SRR2868004Drought Stress(Tissue:root)64.913
SRR2967015Control (Tissue:root)60.682

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave66.072
SRR9715740Leave67.608
SRR9715741Leave65.145
SRR9715739Root80.819
SRR9715742Root87.735
SRR9715743Root80.524

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h78.487
SRR8749028MeJA induced 9h32.260
SRR8749029MeJA induced 9h36.383
SRR8749030Uninduced16.654
SRR8749031Uninduced8.911
SRR8749032Uninduced14.039

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root111.075
SRR8400027Control-Root110.315

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved